RNA id: AMCG00000442


Basic Information

Item Value
RNA id AMCG00000442
length 1530
RNA type mRNA
GC content 0.60
exon number 9
gene id AMCG00000442
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15042140 ~ 15065371 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAACTGATGCAACTGATGCGCTGTGCTTCTGTCCCACTGCCAGCAGAAGCAGACCACCAGGGTACACCTTGGCCTCTGGGTGTGATGGATGAGCTGGTGCATGACCTGGCGTCTGCGCTGGAGCAGACCTCGGAGCAGAACAAGCTGGAGGAGCTGTGGGAGGAGATGGTCCTGAGCCCCCTGCAGCAGCGGCGGCAGATCCGGCGGCGGCGGGGCAGGAAGCGGCGCTGCGACTCGTCCCACTCGCTGGAGCACGCGCGCTGCTTCAGTGAGGCCTCCGAGTCCAGCCTGGACGAGGCCGCCAAGGACTGCCGCGAGAACGCCGCTGCGGCCGCCAACTTCAGTGACTCAGACGACATGATCGTGGCAAAGAGGCggccctccttctcctcctccctcaaGAGCAAGCAGCACTCCTGGCCTGAGTCCGACTCCTTCACCGAGAACACGCCGGGGCGGCCCATGCGGAGGCGGCGGAAGGTGAAGCGCATGACCTCTGATGTGACGGTCAGCCTCCAGCAGAAACTCAAGGTGTCTGAGCTGGACAGGGAGCGGACGGGGAACCACAAGTCGGCCAAGAAGCAACGGCTGTCCAAACTGAAGAAGAGCGGCAGTCCCTGGGTCGGTGGCCACGAGGCGGTGGGCGGCAGTGGGCTGATCAACGAGGAGGCCTGGAAGGGAAACATGATGTTTGAGGCAGAAGAGCAGAAAGAAGCCTCCGATGAAAACATGTCAGAATGTGACACCAGCAGTGTGTGTAGCAGTGATCCAGGGCTTTTCACTAACGATGAGGGAAGACAAGGAGACGACGAGCAGAGTGACTGGTTCTTTGAAGGAGAGTGTGGCCCTGGGATTGGGGTGCCCGGTCTCCTGCCCAGTTGGGAGACGGACTCTCAGCCGGAGTTGGAAGCCCTGGATTCCAGTCTGGAGAAGCTCGCCTCCCCCACCTTCCTCCAGCCGGCCCGGCCAGCTCAGAGAGGGTATCATGCCCGACTCAACCGCCTGCCAGGAGTGGCTGCCCGCTGCATCCGCAAGGGCAGAAGGAGACTGCCGGGAAAGGATAGCAGTGTTGCAGCCATGGCTGCCGAGAGAATGAACCATTTCTCCCAAGATCCGTACCAAAAAGATTTTTGGCTGCCGTCGATTGGAAAAAGAGACTGGCACCAGTTCAACCCACTGTCTCCACTCTATCCGGTGGACATGGTGTCTGATGGCTCGCACCGGCGTTGTTCCTCAGCACTGTGTAAAAACAGGCAGACAAGCGTGCACCTGGGATTACTTTGTACTGGAGACAtcaagagaagaagaaaaactacAGCTGTGCCCAGTTCTGCAGCAGCCTGTACTCCATTCCACGAGGACAGCCTGGGGGAGGCGACGGAGAGCCCTGGGAACGACACCAGCTCCCTCACCATGGAGTCGAccagaggagaaggagggggacCCCTGCCGTCCGAGAAACAGGACTTCATCAAGCCGGGGAACTTCTTTAACTCGCAGAGGGAGCAAGAAGAGGACTTGAACTAA

Function

GO: NA

KEGG:

id description
K17569 GPATCH2; G patch domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189312 lncRNA downstream 150434 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 546480 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 792079 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 888294 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 1022614 14003076 ~ 14019526 (-) False AMCG00000409
TU189360 lncRNA upstream 58688 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 163526 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 185254 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 196016 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 206025 15271396 ~ 15273123 (-) True G150504
AMCG00000446 mRNA downstream 65718 14954668 ~ 14976422 (-) True AMCG00000446
AMCG00000445 mRNA downstream 98961 14939745 ~ 14943179 (-) True AMCG00000445
AMCG00000444 mRNA downstream 151610 14881250 ~ 14890530 (-) True AMCG00000444
AMCG00000453 mRNA downstream 173483 14862756 ~ 14868657 (-) True AMCG00000453
AMCG00000455 mRNA downstream 181316 14860339 ~ 14860824 (-) True AMCG00000455
AMCG00000459 mRNA upstream 26771 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000457 mRNA upstream 58654 15124025 ~ 15137923 (-) True AMCG00000457
AMCG00000458 mRNA upstream 76025 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000466 mRNA upstream 121828 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000464 mRNA upstream 148031 15213402 ~ 15222645 (-) False AMCG00000464
TU189195 other downstream 469708 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1215431 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2499830 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2958926 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 5106590 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 148043 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 223981 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1742721 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2941725 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3346117 18411488 ~ 18412525 (-) True G151087

Expression Profile