RNA id: AMCG00000445


Basic Information

Item Value
RNA id AMCG00000445
length 486
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00000445
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14939745 ~ 14943179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCCTGCTGCAGAGCGCCTGGATGGAGATCCTCATCCTCAGCATCGTGTTTCGCTCGCTGCCCTACGAGGACGAGCTGGTGTACGCCGAGGATTACATCATGGACGAGGAGCACTCGCGCCTCACCGGCCTGCTCGACCTCTACGTGTCCATCCTGCAGCTGGTGCGCAAGTACAAGAAGCTCAAGGTGGAGAAGGAGGAGTTCGTCACGCTGAAGGCCATCGCACTCGCCAACTCGGATTCCATGCACATAGAGGACGTGGAGGCCGTGCAGAAGCTCCAGGATGCCCTTCACGAGGCCTTGCAGGACTATGAGGGCAGCCAGCACCAGGAGGACCCGCGGCGGGCAGGCAAGCTGCTTATGACCCTCCCGCTCCTCCGACAGACCGCCACCAAAGCAGTGCAGCACTTTTACAGCATCAAACTCCAGGGCAAGGTGCCCATGCACAAACTCTTCCTGGAAATGTTAGAGGCCAAAGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189312 lncRNA downstream 48039 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 444085 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 689684 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 785899 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 920219 14003076 ~ 14019526 (-) False AMCG00000409
TU189360 lncRNA upstream 180880 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 285718 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 307446 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 318208 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 328217 15271396 ~ 15273123 (-) True G150504
AMCG00000444 mRNA downstream 49215 14881250 ~ 14890530 (-) True AMCG00000444
AMCG00000453 mRNA downstream 71088 14862756 ~ 14868657 (-) True AMCG00000453
AMCG00000455 mRNA downstream 78921 14860339 ~ 14860824 (-) True AMCG00000455
AMCG00000454 mRNA downstream 80757 14839239 ~ 14858988 (-) True AMCG00000454
AMCG00000451 mRNA downstream 115136 14822861 ~ 14824609 (-) True AMCG00000451
AMCG00000446 mRNA upstream 11489 14954668 ~ 14976422 (-) True AMCG00000446
AMCG00000442 mRNA upstream 98961 15042140 ~ 15065371 (-) True AMCG00000442
AMCG00000459 mRNA upstream 148963 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000457 mRNA upstream 180846 15124025 ~ 15137923 (-) True AMCG00000457
AMCG00000458 mRNA upstream 198217 15141396 ~ 15180517 (-) True AMCG00000458
TU189195 other downstream 367313 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1113036 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2397435 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2856531 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 5004195 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 270235 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 346173 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1864913 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3063917 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3468309 18411488 ~ 18412525 (-) True G151087

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023328 True 2426 mRNA 0.52 6 NC_007128.7 52300018 ~ 52386518 (+)
grasscarp (Ctenopharyngodon idella) CI01000316_00190659_00237560.mRNA True 1344 mRNA 0.60 6 CI01000316 190659 ~ 237560 (-)