RNA id: AMCG00000451


Basic Information

Item Value
RNA id AMCG00000451
length 939
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00000451
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14822861 ~ 14824609 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAGGAACATGACATTAGTGGTGAACCGGCTCGAGAGATACGACAAGAACAACCTGCTGGTGATGCAGCATGAGTTTACTAAACTGCAGAAGAAACTGGAGGAGTGCCAGAAGTGGCATGAAGAGTCTTCCAAACCTAATATTGGATTCTGTAATCACGCAGGCATTTCTAACATCAGCAAGCCATATATAGTCCAGCTAAATGCACATATCAATGAGGGATACCTTCATGGAGGTTGGGGGAAAGATTCAAAGCCAAAGCCGGGCTTTGAGGAGATGTACTGGTATTCAGGGTATACTACCCCCTACACCTACAACCTGTACCTGTACTCAGACTACACCAACCTGCTCTTaagaaatcaatttaaatattttgataatacCCTGAAGGGGAATGGCATTAATAACATAATGCATGGGAATTACTACTATTATAACTGCTATAATACtggaaatctgtgcagaatgaatGCAACGACGTTTGAGGTCGAGACCAGAGTGTTCCCTGATGCTGCCTGGAACAACAGGTTCTCCTACAGTTCTGCCACGTACCAGGATTTTGACTTTGCAGCCGATGAAAACGGGCTGTGGGTCATTTATGCAACAGAAGCCAGTAAGGGTAACATGGTCCTATCCAAAATGAATGTAGATGGTTTTTCAGCACAGCAGACCTGGGTGACAAATGTATTTAGGCGGAGCGTTAGTAATGCTTTCATGGTGTGTGGTGTTCTGTATGCCACGAGACAAATGAATCTTTACACTGAGGAGGTATTCTATAAATTTGATACTAAGACAGGTAAGGAGAGTTATATAAGCATTCCTTTCAATAAGCAATATGAAGTATTTGTGTACCTTGATTACAACCCTGCGGATCAGAGGCTTTACATGTATAGCAAAGGCTACTACATCTATTACAATGTAAAATTCGAAATGATATAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189160 lncRNA downstream 327201 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 572800 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 669015 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 803335 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 1061264 13756516 ~ 13761597 (-) True G150119
TU189312 lncRNA upstream 65925 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 299450 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 404288 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 426016 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 436778 15261387 ~ 15263576 (-) True G150502
AMCG00000452 mRNA downstream 1380 14810917 ~ 14821481 (-) True AMCG00000452
AMCG00000450 mRNA downstream 32653 14781202 ~ 14790208 (-) True AMCG00000450
AMCG00000438 mRNA downstream 70921 14737457 ~ 14751940 (-) True AMCG00000438
AMCG00000440 mRNA downstream 162981 14599287 ~ 14659880 (-) True AMCG00000440
AMCG00000441 mRNA downstream 232029 14585881 ~ 14590832 (-) True AMCG00000441
AMCG00000454 mRNA upstream 14630 14839239 ~ 14858988 (-) True AMCG00000454
AMCG00000455 mRNA upstream 35730 14860339 ~ 14860824 (-) True AMCG00000455
AMCG00000453 mRNA upstream 38147 14862756 ~ 14868657 (-) True AMCG00000453
AMCG00000444 mRNA upstream 56641 14881250 ~ 14890530 (-) True AMCG00000444
AMCG00000445 mRNA upstream 115136 14939745 ~ 14943179 (-) True AMCG00000445
TU189195 other downstream 250429 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 996152 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2280551 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2739647 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4887311 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 388805 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 464743 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1983483 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3182487 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3586879 18411488 ~ 18412525 (-) True G151087

Expression Profile