RNA id: AMCG00000453


Basic Information

Item Value
RNA id AMCG00000453
length 1821
RNA type mRNA
GC content 0.56
exon number 13
gene id AMCG00000453
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14862756 ~ 14868657 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCACACCAGCCTGTCGATTGAGGCCCTTTGTCTGGAGAGTGGGCACTGCGCTCGAGGAGAGGAGCCGGGCAGTGGCGAGGAGTGGGACACGGACCTGGAGGAAGACGAAGTGGCCGAGAGCAGCGGTGTCTCTGCCCGTGACCTCTACCTGCAGGCCTGTCAGCTGGTGGGTGTGGTGCCAGTTTCCTACTTCCTGCGTAACCTTGGCTGCAACAGCAACCTCAACCTCAACCACCATGGGCTGGGGCCCCGGGGGGCCAAGGCGCTGGCTATAGCTCTAGTTAGTGATGTGACAATCACTACCCTTGAATTGGAAGACAACGGTCTGCAAGCAGAGGGTGTGAAATACCTGGTGGAGATGTTAAAGGCAAACTGCACAATTCAGAATCTGaatCTCTCCAATAACCACTTGCAGTCTGCAGGTGCTGACTATATCTCCAGAATGTTGCTTGACAACATTTCCCTCAGATCACTAAAACTGTCAGGAAATGAATTTAGAGAGGAGGATGCCAAGAGTCTTTCAGATGCCTTTTCTAGCAATTACAGAGTCAGGGAGTTGGACCTGAGCCACAATGAGTTCATGGAGAAGGGTGGAGAGCACTTGGGCCAAATGCTAGCGAACAACGAAGGACTGGAGGCGTTGAACCTGAGCTGGAATCGGCTGCGGATGAAAGGAGCTGTGGCTCTGTGTGCAGGACTTAAGGTCAACATCACGCTGAAGGTCTTAGATCTGTCCTGGAACGGCTTTGGGAACGAAGGTGCCCTGGCTCTGGGCGAGGCGCTGAAGTTCAACAACACCCTGCTGCACCTGGACCTGAGCAGCAACCGCATCACCAATGAAGGGGCTGGCATGCTATGCAAAGGGCTGGAGGCCAACGACACGCTGAAAGTGCTGAGGCTGGCCTACAACTCGCTGACCGTGGAGGGTGCTCTGGCTCTGCTCACTGTGCTCTTGGAGGTGACCTGTCAGCAACACCAGGGCCTGGAGGTTCTCTATGGAGGGGTTGGGGGGTTCATCGCCAAGAAGCCACCTCAGCGCCCCGACCCCATGAAAGTCATTCAGGATTACTTAGACGAACGCAAGCTGCGCCTCTGGGACTTCTTCCGGAAGATCGATAAAGACGGATCGATGCGAGTGCCCGTCTCGGAGTTCAGGAAGGCCGTGCAGCAATCAAGCATTCCTCTGGATCGGTTCCAGATAGAGGAGCTAGTGCAGAGGCTGGATAAGGACAGGACTGGGAAAGTGGACTACAGGGGTCTGGCTGACACCAGGAAGCAGATGATGCGCGATCACCGGCGGCAGCTGCGGAAGGTAGAGTCCCggcagaagaaggagaagcaGAAAAGCGAGCGCATCCTGAAGACCTTCCAGAGTGCCGTGGAGGCCGTCACCCCCCGCAGCTCCATGGTGATTTCTCCGGGGGGCGCCAAGGATGAGTCTGGTGGGCCTCGGCACTTTTCTGCCACACCGCTCAGCTCCTGGCACCACGTGGTGATGTCAAACAGCAGCCGCTTTTCTGTTTCAAACCTGAGCAGTGATCATGTCCACGTCACACCCACCGGGGCCCAGCCTACCCCACTGtctgcctcctctccagagGCACACTCATATTCCCAGCCCAACCTCCTCTCCGAAGCCCGTGGGTCTCCCCCTGTCAAGGCGGTCTCGGCCCAGGGTCTTCATTCGACCTCGAACCCGGAAGTTTGCTCTTGCAATCTGAGCTCAGGATTCAACAGCTTGACCAGGTCCAGGCCAGCACTCACACCTCCCAAGAGGCAGGCTTCGAAAAGTCCTAAGAAGAAGtcctcaaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189160 lncRNA downstream 367096 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 612695 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 708910 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 843230 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 1101159 13756516 ~ 13761597 (-) True G150119
TU189312 lncRNA upstream 21877 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 255402 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 360240 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 381968 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 392730 15261387 ~ 15263576 (-) True G150502
AMCG00000455 mRNA downstream 1932 14860339 ~ 14860824 (-) True AMCG00000455
AMCG00000454 mRNA downstream 3768 14839239 ~ 14858988 (-) True AMCG00000454
AMCG00000451 mRNA downstream 38147 14822861 ~ 14824609 (-) True AMCG00000451
AMCG00000452 mRNA downstream 41275 14810917 ~ 14821481 (-) True AMCG00000452
AMCG00000450 mRNA downstream 72548 14781202 ~ 14790208 (-) True AMCG00000450
AMCG00000444 mRNA upstream 12593 14881250 ~ 14890530 (-) True AMCG00000444
AMCG00000445 mRNA upstream 71088 14939745 ~ 14943179 (-) True AMCG00000445
AMCG00000446 mRNA upstream 86011 14954668 ~ 14976422 (-) True AMCG00000446
AMCG00000442 mRNA upstream 173483 15042140 ~ 15065371 (-) True AMCG00000442
AMCG00000459 mRNA upstream 223485 15092142 ~ 15108451 (-) True AMCG00000459
TU189195 other downstream 290324 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1036047 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2320446 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2779542 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4927206 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 344757 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 420695 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1939435 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3138439 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3542831 18411488 ~ 18412525 (-) True G151087

Expression Profile