RNA id: AMCG00000454


Basic Information

Item Value
RNA id AMCG00000454
length 2859
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00000454
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14839239 ~ 14858988 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCATATATAGTCCAGCTGGGCGCACATGTCAATGAGGGTTACCTTCATGGAGGATGGGGAAAAGATTCAAAGCCGAAGCCGGGCTTTGAGGACATGTACTGGTATTCAGGGTATACTACCCCCTACACCTACAACCTGTACCTGTACTCAGACTACACCAACCTGCTCTTAAGAAAATCCTTTAAAAAGTTTGAGAACGACCGCAAGGGGAATGgcaataataacataattaatggAAATTACTTCTATTATAACTGCTATAATACtggaaatctgtgcagaatgaatGCAACGACATTTGCGGTCGAGACCAGGGTGTTGCCTGATGCTGCCTGGAACAACAGGTTCTCCTACAGTTCTGCCACGTACCAGGATTTTGACTTTGCAGCCGATGAAAACGGGCTGTGGGTCATTTATGCAACAGAAGCCAGTAAGGGTAACATGGTCATATCCAAAATTAATGTAGATGCCTTTTCAGTAGAACAGACCTGGGTGACAAATATATTTAGGCGCAGAGTCAGTAATGCTTTCATGGTGTGTGGCGTTCTGTACGCCACCAGACAAATAAACCTTAACATTGAGGAGATATTCTACAAATATGATACTAAGACAGGTAAAGAGAGTTATATAAGCATTCCTTTCAATAAGCAATATGAAGGATTTGTGTACCTTGATTACAACCCTGCGGATCAGAGGCTATACATGTATAGCAAAGGCTACTACATCTATTACAATGTTAAGTTCCACAAATTACAGCAACAgACACCAAAACACAAGAGAGCTGGGAGGACAACACTGAAGAACAATGGGTCCTGCTCTGCTCCTGTTTGCTCTCCTCAGATCTACGTTGGCCTGGGTGACCACTGGGGCTCTGGCAATGTGACTGCAGGTGCAGACGAGAACGGACAGTGTGTCTGTAAAGTGTTCCTGCCAGACACTAGTTTTCCAGGTGACAAAGTGGAACTCCTGCAAAAAACATCAATGGAGCTTAGCCAGAAAGTGGAGCTGGGATTGAGCAAGCTTGAACTCTACGAAAGCAAGCTGGTCATTTATGCCCAGAAGCTGGTGAACCTGACGATCCAGAACATGACATCAGTGGTGAACCAGCTCGAGAGATACGACAAGAACAACCTGCTGGTGATGCAGCATGAGTTCAGTAAACTGCAGAAGAAACTGGAGGATTGCCAGAAGTGGCACGATGAGTCTTTCAAGCCTGATATTGGATCCTGTAATCACGGAGGCATTTCTAACATCAGCATGCCATATATAGTCCAGCTGGGCGCACATGTCAATGAGGGTTACCTTCATGGAGGATGGGGAAAAGATTCAAAGCCGAAGCCGGGCTTTGAGGACATGTACTGGTATTCAGGGTATACTACCCCCTACACCTACAACCTGTACCTGTACTCAGACTACACCAACCTGCTCTTAAGAAAATCCTTTAAAAAGTTTGAGAACGACCGCAAGGGGAATGGCAATAATAACATAATGAATGGAAATTACTTCTATTATAACTGCTATAATACtggaaatctgtgcagaatgaatGCAACGACGTTTGCGGTCGAGACCAGGGTGTTGCCTGATGCTGCCTGGAACAACAAGTTCTCCTACAGTTCTGCCACGTACCAGGATTTTGACTTTGCAGCCGATGAAAACGGGCTGTGGGTCATTTATGCAACAGAAGCCAGTGAGGGTAACATGGTCATATCCAAAATTAATGTAGATGCCTTTTCAGTAGAACAGACCTGGGTGACAAATATATTTAGGCGCAGAGTCAGTAATGCTTTCATGGTGTGTGGCGTTCTGTACGCCACCAGACAAATAAACCTTAACATTGAGGAGATATTCTACAAATATGATACTAAGACAGGTAAAGAGAGTTATATAAGCATTCCTTTCAATAAGCAATATGAAGGATTTGTGTACCTTGATTACAACCCTGCGGATCAGAGGCTTTACATGTATAGCAAAGGCTACTACATCTATTACAATCTAAATGCACATGTCAGTGAGAGTTACCTTTATGGAGGATGGGGAAAAGATTCAAAGCCGAAGCCTGGATTTCAGGAGATGTACTGGTATTCAGGGTATACTAGCCCCTACACCTACAACCTGTACCTGTACTCAGACTACACCAACCTGctcttaagaaaacaatttaaatattttgataacGACCATAAGGGGTATGGCAATAATGACATAATGCATGGGAATTACTACTATTATAACTGCTATAATACTGGAAATCTGTGCAGATTGAATGCAACGACGTTTGCGGTCGAGACCAGAGTGTTCCCTGATGCTGCCTGGAACAACAGGTTCTCCTACAGTTCTGCCACGTACCAGGATTTTGACTTTGCAGCCGATGAAAACGGGCTGTGGGTCATTTATGCAACAGAAGCCAGTAAGGGTAACATGGTCCTATCCAAAATGAATGTAGATGCCTTTTCAGCACAGCAGACCTGGGTGACAAATGTATTTAGGCGGAGAGTGAGCAATGCTTTCATGGTGTGTGGCGTTCTGTATGCCACGAGACAAATGAATCTTTACACTGAGGAGATATTCTACAAATTTGATACTAAGACAGGTAAGGAGAGTTATATAAGCATTCCTTTCAATAAGCAATATGAAGGATTTGTGTACCTTGATTACAACCCTGCGGATCAGAGGCTATACATGTATAGCAAAGGCTACTATATCTATTACAAAGTTAAGTTCCAAAAATTGCAGCAACAggtttaaatatcaatatattcTCAAGAGTGACTTGTTTTCACATATCTACAATAAGACACATCAGTGATTACAACTGTGTTATTccttgaatgaataaatgaaatatgtaaGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189160 lncRNA downstream 343579 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 589178 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 685393 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 819713 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 1077642 13756516 ~ 13761597 (-) True G150119
TU189312 lncRNA upstream 31546 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 265071 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 369909 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 391637 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 402399 15261387 ~ 15263576 (-) True G150502
AMCG00000451 mRNA downstream 14630 14822861 ~ 14824609 (-) True AMCG00000451
AMCG00000452 mRNA downstream 17758 14810917 ~ 14821481 (-) True AMCG00000452
AMCG00000450 mRNA downstream 49031 14781202 ~ 14790208 (-) True AMCG00000450
AMCG00000438 mRNA downstream 87299 14737457 ~ 14751940 (-) True AMCG00000438
AMCG00000440 mRNA downstream 179359 14599287 ~ 14659880 (-) True AMCG00000440
AMCG00000455 mRNA upstream 1351 14860339 ~ 14860824 (-) True AMCG00000455
AMCG00000453 mRNA upstream 3768 14862756 ~ 14868657 (-) True AMCG00000453
AMCG00000444 mRNA upstream 22262 14881250 ~ 14890530 (-) True AMCG00000444
AMCG00000445 mRNA upstream 80757 14939745 ~ 14943179 (-) True AMCG00000445
AMCG00000446 mRNA upstream 95680 14954668 ~ 14976422 (-) True AMCG00000446
TU189195 other downstream 266807 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1012530 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2296929 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2756025 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4903689 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 354426 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 430364 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1949104 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3148108 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3552500 18411488 ~ 18412525 (-) True G151087

Expression Profile