RNA id: AMCG00000457


Basic Information

Item Value
RNA id AMCG00000457
length 2245
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00000457
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15124025 ~ 15137923 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATCCTAAATGCCCAGCCTCCATCTCCTGCTGCCCCCAGTTCTCTGTCTGCCAGCTCCTCCAGCCAGTGGCCCCGAGGACCGGCTAGCTTGCCCTGGACAGGCCGGCCCCCAAAGAGCACCACCTCCCAGGGCCCCCCCATCCTGGCACCCAAACCACCCAGCAGCAACAGGGAAGGAATCACCCGGAAAACGGCCACCCAGCGCCTCAACAAACTGGCTCCTTCAGAAGGTCACACCAATGGGACTTTACCTAACACACACCATGTTGTCTATGAGCAGATCTCTGGGAACTCCAGTCTGTCTGGTTATCACAGGCTGCTGCAGGGCAAGAGCAAGTGAAAGCCGTGTGTCTGTTCTTCCACTTGAAATGAGACGCATCTGAGCCATCTGGGCCTGGGGACGGTCTTCAAGTGTGTACTGCTCTGGACCGGTTTCTAAAAGAAGCAAAATCTGGCCACATGTTCCTGCTGAATCTGGGAGCAGTCCTGAAGTCAGAAACAAAAGGGAACAAATTCATTTTTCCTGGACTTAATCTGACTAAAAACTGCTTTGGGAGACTTGATTTCAGATGTATTCTTCAAATATCCGGTGACCCATTCTGTATGAACCCTGCAGGATGTTTGATTTAACCACCTTTTGCTGGGATATgatgcaggttttttttctgGTCAGGATTTGACAACCGTGTAAGGAATCTTTCGACTGGATACGAGCTGATGTCCGTTGCGCTGTCCAGCCCTTCACCGTCGCCTCCTCTTTCGGCCCCCGAGCGGCAGTTAATCCCGGTTCTTCGATGCGATCGACACCGCAGAAGGACTCGGCTGACAGATGTATGTGAACAGCTGCTCATACACACATTCTGGGTGCAAATGGTCCGGCAGCATGTGCACCAATCACCATGTCCCTGAGACAGTCACAGACCTCCAGAAAACTAACAATGACTTGACCCTGTGATCCGCTGTACTAGCACTGCTGAAGAGATTTGCTTTGGGGGCTCCAGAAACTGTCCAGGCTCCTTACACAGtcaaaaacaaactacactTACAGCCATTAGATTACTTACCACTGAGCAAActgaatttaacttttttttttttaatctagtaATGATTTCCACCATGCCTTTGACACAGTCTGgttgcaattatatttatttgtcatagtattttatttattttttatgtaccAATGGCAGACTTCTGAAAAACCTGTGAATAGCTAGCCCTTTACAAATCTCCTCAAAACTATATATTCTCACCCTTAACAGTAAAgagattaactttttttttttttttttaatgaagccCAGTGATAAGGGGGTCAGTTTTTTCCTGATGCAATGAAAAATGATTTGAATGATGCTGCTCTTTTTGAATGTTGAAATGCTTCAGAGGATAGAAGTTTCCCATTGTCTTCTTTGAAACTTTTACAGGACACATGGGCCAACACGTGTGCAGCCTCCAGATTCCCTTCTTTACACATCTGATTGAATATccttctgtttgtttatgtatactGGGTCCATAAATTgatgatatacatttttttgtttttaatggttcagaaaatacttgaaattTGTgctttatactttttatttttatttttaaatcaagcaaTATGTAAggctttaaaatgacatttattcCTTGGTTTTATGCTGAAAATATTTAGAGAGCATATTCATGGATctttccagtgtgtgtgtttgtatatatatagacaaGTGGCACACTGTATCACTGTTTCAGTAAATGTCTTAAATGAACCGAGTCACTTTAACATCTGTGCCACTGAGGTTTCCATATTGAAAGGTTTCAATACATTCGATGATAAATTCTATTATCGGATGTTTTTCTAGATTCCTAAAAGTTATGATCGATAATATATAGTGGTGTTTTACTGTGTTACACATCCACAAACGTATGGTTTATATAGCTTAGAGTTTAAAGCACCAATTTTTAAATGTCGTCCTCAGAAACAGGCCCACCCCAGCCAGTGAGGACCAGTGGCAGTGTGTCCCAGttttagatgtttttctttatttcatgttttacctCCAGAAACAAAGAGCTCTCTTTGTACACAGGAATTGCCATTTTAAGCCTCAATGTTGCGAGTGATTCAGAtttttaatcaatgtttttaatcatgttAATGTGTGCAATGAAAGTTAttactggtttattttttagcagacttattttcataataaatttctttacaaaatgaaaataaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189312 lncRNA downstream 232319 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 628365 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 873964 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 970179 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 1104499 14003076 ~ 14019526 (-) False AMCG00000409
TU189373 lncRNA upstream 90974 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 112702 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 123464 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 133473 15271396 ~ 15273123 (-) True G150504
TU189401 lncRNA upstream 138040 15275963 ~ 15278056 (-) True G150497
AMCG00000459 mRNA downstream 15574 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000442 mRNA downstream 58654 15042140 ~ 15065371 (-) True AMCG00000442
AMCG00000446 mRNA downstream 147603 14954668 ~ 14976422 (-) True AMCG00000446
AMCG00000445 mRNA downstream 180846 14939745 ~ 14943179 (-) True AMCG00000445
AMCG00000444 mRNA downstream 233495 14881250 ~ 14890530 (-) True AMCG00000444
AMCG00000458 mRNA upstream 3473 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000466 mRNA upstream 49276 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000464 mRNA upstream 75479 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000463 mRNA upstream 92365 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000467 mRNA upstream 115369 15253292 ~ 15255829 (-) True AMCG00000467
TU189195 other downstream 551593 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1297316 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2581715 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3040811 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 5188475 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 75491 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 151429 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1670169 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2869173 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3273565 18411488 ~ 18412525 (-) True G151087

Expression Profile