RNA id: AMCG00000458


Basic Information

Item Value
RNA id AMCG00000458
length 3255
RNA type mRNA
GC content 0.52
exon number 26
gene id AMCG00000458
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15141396 ~ 15180517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCACCCTTGCATAGCTTGGAGTGGGAGCAGCAAGAAAATCCCAGTTGTCGTTTTCCATGCGGAAGCAATAGTGACTAAAGATGGCAACATCCGGACTGTTGGAGAACGGTATCATTTGGCTTTCAAGATTGTCCGGACGGAGAGTCGTCTGGTCCGCAGCATTCTCACTGTTCATGGATTCCATGAGGTCCATCCGAACAGCAATGATTTCAATCTGATGTGGACAGGGTCTCATCTCAAGCCTTATCTCCTCCGCAACCTTCTGGACTTCCAGAAGGTCAACCACTTCCCCAGATCATATGAACTGACACGGAAAGACAGACTTTACAAAAACATCCAGCGCATGCAGCAAACCTATGGTTTTAAAAACTTCCACATTGTCCCTCAGACGTTCATGCTTCCATCTGAATACCAGGAGTTTTGCAGTGCCTACTCCAAAGACAAAGGTCCATGGATAATTAAGCCCGTAGCTTCTTCAAGAGGCCGTGGTATTTACCTCGTTAGCAATCCCAACCAGATTCCATTAGACGAAAACATTCTTGTTTCACGCTACATCAGCAATCCATTATTGATCGATGATTTCAAATTTGATGTACGTTTATATGTCCTCATTACCTCCTACGAACCTCTGATAATCTATCTCTATGAAGAAGGACTGGCAAGGTTTGCAACAGTTAAGTATGACCGTGCAACAAAGAACATCAAGAACCAGTTCATGCACCTCACTAACTACAGCGTGAACAAGAAGAGCAATGACTATGTCAgCTGTGATGACCCTGAGGTAGAGGATTATGGGAACAAATGGAGTATGAGCGCCATGCTGAGGTACTTGAAGCAAGAAGGCAAGGACACAACATTGCTGATGAGCCAGGTTGAGGATCTCATTATTAAGGCGTTACTAAGTGCCGAACTGCCCATTGCCACAGCCTGTAAGATGTTCGTGCCACACCGGAACAACTGCTTTGAGCTCTATGGCTTTGATGTTCTCATTgactcaaatctgaaaccttgGCTGTTGGAAGTGAATCTTTCCCCTTCCTTGGCATGTGACGCACCTTTGGATCTGAAGATCAAAGCCAGCGTGATTTCAgacatgtttactttagtgGgCTTTGTTTGTCAAGACCCGTTACAAAGACAACCCAGAACAGGGAGATTGCCTCTTGATGCCGGCTCCAGGTACCAGACTCACAGAACCCAGCGTCAGCGACCCTTGTCAGCCAGCGATGTGGATTCAAATGTTGCGAAAGAGAAGCAAGCTGGGAAACAAGGTGGAAGCACTTTGGGGTTGACAACAGATGAGCTCAAAGTCCTGCGGCGTATAAAGGAGGAGCACGAGAGAAGGGGGGGGTTCGTTCGTATCTTCCCTACGGCAGACACCTGGGAACTGTACAGTGGCTATCTGGAGTATAAGACATCCATGAATTACATGTTGGCAACAAGACTCTTCCCAGAGAAaaaCGGTTTGAACGGCCATGTGGTGCTGAGTGTCAACGTGCTTCATGCGGAAGCGCGGCAGCACGTGCTTCAGTACGAACGGAAACTGCTGTCACTGGAGGCGCGGAAACGCAGGAGGCGGCACCTCGCAGCACGGTCCACACTTGGAAAGAAAAGAGGAGCTGCAAAAGGGCGTAAGGCCTCGTCTCCAGAGACTACAGACACCGATGAAGATGAGGAGTCTGgagaagaagagggggaggaagaggaggaggaggaggatgaagacgTAATGCAGGCTCCTCCACAGAAACCCAGCATTAACAAAGACAAAGCTCCTCAGCTGCCTTTGACAGCTGCTTCTTCCACTGCGCCCCAGAAACTGCTTAAGGACCCACCGCACAAGACCGCAGACAAGACTGTCAAACCAGTGCAGCCGAAATCTAAAGTCAACCTCCTGCACATCCTTCAGCAGGGCTGGAATCTCAGCAAAGTGCAGGCCCGGATGTCTTTCTCCTCCTACCTACACAGAGTTCAGATGAGACTTCTGGCAGAAAGCAAGGGAAACGACAGCTCAGCCTGGCCAGAGAGAGACGATGAGCAAATGGAGCTGGTGATTCGGTTCCTTAAACGTGCTGCGAGTAACCTCCAGCAGGAGCTGAAGATGGTGTTACCAAGCCGGAGACTCCCCCTCCCGGACCGGTGCCGCATCCTCTCTCACCAGCTGGGGGAGTTTATCCACTGCTACAACAAGgaGACAGAGCAGATGGTGAAAAAACTGGAGAATCTTAAAGACGAGGAACACTGCATCATCAACCCTGATGTTTTCCAGGAGTTTGTCAAAGAAGCTAGCGAGAGCGACCTCGAGGAAGTCCTCACATATTAcactcacaaaaacaaatcggCAAATGTCTTCCTGGGGACGGGATGCAAGAGTGCCAAACCTGGCAACGGTAAATCTACGGAACAGGCTGAAAACAACAGCCAAAAGGGTAAGCTCCTTGCTTCCCAGCTGAAGAGCTCTGTGCCTGCACAGTCCAGATCTCACATGGCGGTCTTAGACAGCTCCCACATTCACGTCCAGCACACCCCTCCCACCTCCGTGCCTCTCTCTGCCCAGCTGGCATCCGCAGCCTCCGCTCCCCCTCAGAGCTCCTGCCCTCCTCTGGCCCCCGCCACCCTGCCCAGGACTTCCTCGCTGCTGACCAGGCCCAGCTCAGCCTCTGTCTCGGCACAGAGCGGCCACACCGCCCAGCCTCTGCAGCGCAGTAGGTCCAGCAGCTACAGCAACCAGGGCAGCGTGTCCTCCATGCCCAGGGCCGTGCACATCTACAGCCAGAGACTGTCCCGGCCACCCTCGGCACGCTTCGGTTCAGGTCGGAGCAATGCCAGCAGGACTCAGCCTGGGTCCGCTACGGTGTCGAAAGACCCTGACACCCTGCCTGACCAGGAGGCCATTGCCACAGCGTTACAGAGACTGGCTGACAAACAGGCGACACGACAGTACTCCGCCTCCAGCCACATCCGTCTCCTCACTCAGCACTTAAGCAATCTTAACTTGGCGAGTGGTGCTTTAAGCCGAGGACACTTTGCTCTGAGCCCTGCTGTCCGCCAAGGAGGGCTCTCCTCAGGACCTGATGATGACAGCACATGGGaaggagaaacagaaaatgcatacaGCATGATCACAGGGGTCTCACCACAGCAAAGATACCAGCCTACCACGGGCAGTTACCAGCTTCAGTTTGCAAtacagcagctccagcagcagaAACTACAGTCCCGTCAACTGCTGGACCACAGTCGGGCGCGCCAT

Function

GO: NA

KEGG:

id description
K16602 TTLL5, TTLL10; tubulin polyglutamylase TTLL5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189360 lncRNA downstream 16800 15124059 ~ 15124596 (-) False AMCG00000457
TU189312 lncRNA downstream 249690 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 645736 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 891335 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 987550 14151588 ~ 14153846 (-) True G150219
TU189373 lncRNA upstream 48380 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 70108 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 80870 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 90879 15271396 ~ 15273123 (-) True G150504
TU189401 lncRNA upstream 95446 15275963 ~ 15278056 (-) True G150497
AMCG00000457 mRNA downstream 3473 15124025 ~ 15137923 (-) True AMCG00000457
AMCG00000459 mRNA downstream 32945 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000442 mRNA downstream 76025 15042140 ~ 15065371 (-) True AMCG00000442
AMCG00000446 mRNA downstream 164974 14954668 ~ 14976422 (-) True AMCG00000446
AMCG00000445 mRNA downstream 198217 14939745 ~ 14943179 (-) True AMCG00000445
AMCG00000466 mRNA upstream 6682 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000464 mRNA upstream 32885 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000463 mRNA upstream 49771 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000467 mRNA upstream 72775 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000465 mRNA upstream 98972 15279489 ~ 15288455 (-) True AMCG00000465
TU189195 other downstream 568964 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1314687 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2599086 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3058182 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 5205846 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 32897 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 108835 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1627575 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2826579 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3230971 18411488 ~ 18412525 (-) True G151087

Expression Profile