RNA id: AMCG00000459


Basic Information

Item Value
RNA id AMCG00000459
length 953
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00000459
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15092142 ~ 15108451 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGGTGTGTCGCCATGGTGACGGTTACTGCGGGACGCGCTCTCGTATCCAGGAAGTGGAGGAGATCCAAGATGGAGGACGGGCTGGAGCTGGGGGACGGCGGCGTGAGGAAAAGTGCAGTGAAATCGGGCCGAAGAGCAAGGCAGGTGGCGGAGCCCATGCCCGAGGAGTCTCGCCACGTGAGAAAAACCTCCTCTTCGACGTCCATGGGCGAGGGACCTCCACCAAAACCTCCTCGGCGACAGGGAGGCTGGGCAGACGAGACCCCAGGCTCTGCCAAATCTGGAAGACGACCAGCAACGGAAGAGATGGAAGATAGACGCTTGAGACCACAAACCCCGGAGCGCTCGGATGATGAAGGAGATATCCCCGTGATCCCCGACCTTGAAGAGGTGCAGGAGGAGGACCTCACGATGCAGGTGGCAGCTCCACCCAGCATCCAGGTCAACAGAGTGATGACCTATAGAGACTTAGACAATGATCTTATGAAATACTCAGCATTTCAGACTCTGGATGGAGAGATCAACTTAAAATTACTCACAAAGGTATTGGCCCCCGAGCAGGAAGAGGATGTTGGCTGGGACTGGGATCATTTATTCACTGAGGTTTCCTCTGAGCTGATGACTGAATGGGATCAAGGAGACAAAGAGGACCCAAAACAACCACCTTTAGTTACCTGACAGTGGAGATGTGAAAAGGTTGAGCTCTCTGTTCTTAAAATAATGCTGGCTGACCATTTTATTTGGCCTATATAATAAGTGCCAGTATTGCAAGTTTAATCATGATTCCTTCACATCTTTTCCTGACACATTACAGCTTCACTAgcactattattttaatacatttatcctGCATTGACACTATTTTACggtttactgtatattaatagaatatattataACCTggtattaaatgttatttttctaaataaacttaaaaaaacataaatgaa

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process

KEGG:

id description
K19675 IFT43; intraflagellar transport protein 43

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189312 lncRNA downstream 200436 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 596482 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 842081 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 938296 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 1072616 14003076 ~ 14019526 (-) False AMCG00000409
TU189360 lncRNA upstream 15608 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 120446 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 142174 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 152936 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 162945 15271396 ~ 15273123 (-) True G150504
AMCG00000442 mRNA downstream 26771 15042140 ~ 15065371 (-) True AMCG00000442
AMCG00000446 mRNA downstream 115720 14954668 ~ 14976422 (-) True AMCG00000446
AMCG00000445 mRNA downstream 148963 14939745 ~ 14943179 (-) True AMCG00000445
AMCG00000444 mRNA downstream 201612 14881250 ~ 14890530 (-) True AMCG00000444
AMCG00000453 mRNA downstream 223485 14862756 ~ 14868657 (-) True AMCG00000453
AMCG00000457 mRNA upstream 15574 15124025 ~ 15137923 (-) True AMCG00000457
AMCG00000458 mRNA upstream 32945 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000466 mRNA upstream 78748 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000464 mRNA upstream 104951 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000463 mRNA upstream 121837 15230288 ~ 15242153 (-) True AMCG00000463
TU189195 other downstream 519710 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1265433 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2549832 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3008928 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 5156592 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 104963 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 180901 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1699641 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2898645 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3303037 18411488 ~ 18412525 (-) True G151087

Expression Profile