RNA id: AMCG00000463


Basic Information

Item Value
RNA id AMCG00000463
length 1510
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00000463
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15230288 ~ 15242153 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACCTGAAAAACGAATTTCTATCGGATTTAAGACCAAAGGCAGCTTTTTCTCAGCTGTGGAGAGTTTAGTCCGGCATCTCATTTCCAGCTATGCGTGTAACATCTAACCTGCTGCCTCCCAGAAAACTGTATATTGAGCCTCCACATGACTTATGGAACAGCAACTATGAACAGTAGCTGTGGTTGTAGCTGGGCCTGACATGATGCCTGGACAGATACCAGACCCCTCGCTGACGGCAGGTTCTCTCCCCAGTCTCGGGCCGCTGGCCGGCATCCCGTCCACCACTCTGACCACCGAGGAGCTGAAGTACGCCGACATCCGCAACATCGGGGCCATGCTCTCGCCGCTGCACTTCCTGGGGGTCAAACTGGGGAAGAGGCCGTCAGCATTAAAGGGAGAGATGGATGAGGAAGaagagaggaggaaaagaaggcgagagaaaaacaaagtggCGGCAGCACGATGtcgaaataaaaagaaagagcgCACCGAGTTTCTACAAAGGGAGTCGGAGCGGCTGGAGGTGATGAACGCCGAGCTGAAGGCGCAGATCGAGGAGCTGAAACACGAGCGGCAGCAACTCATCGTCATGCTGAACCGACACCGGCCCACCTGCATCGTCAGGACGGACAGCGTGAAGACCCCCGACAGCGAGGCCAACCCCCTGCTGGAGCAGCTGGCTGCCAAGTGAAGGCTGGGCCTGCAGGCTGGATGGGCTGCTCCCCGCCCTGGACTTTGTAGCGCAGCTAGAGTCAGCAGCACTTAGATCTTCACGGAGGAATTTGAAGGAAGCCGAGATCTCCCGTCGAGTCCTTTAGAAAAGGGTAGCTCCGTGAGGCGGTGATGTGGCAGTgctttttctatgttttttttattcattttgatttttgCTCTTCACTGCCACAAAGTTACTGCTGCCATCACTACagacaaaaagaagaaacactCTAAAACAATGTAGATCTGTTCTGGTCTCAGGTACTCAGacagagtttgtttgtttgtttgttttgccaatGTATACTGGTTAAATAAACAgttatagtattttatattattgtttatatccTGCCCTTGACTATGGCAGTCTCCGGTTGAACCGATTAAGGTGACGCAGGCGTCATTAaagcacatatatatgtattgtttacagTCTTGCTGTTACATCATTGTTACTTCcaattttacattgtattttttatgagttTTTTATACtgcaatgtgtatatatatataaatattataaaaatatatatgatatgtaATCACTAGATgtgatgcattttacatttctgttacaAACAGATATACCTTTTTTTATTctgatgtgttgtgtgttttcaatgtgcttttttttctcctcttttgtTCGTTTTATTTACTGAGAGGGAGTCTGGAAAACCTCCTTTCCCAGCTCAATGTCTTCCCCATGGCCATTTGTaacttttcaaacatttatGTCTTTGTTACTCTGTTCTATACTaattaaatcttatttttaaaaata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09033 JDP2; jun dimerization protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189373 lncRNA downstream 996 15228897 ~ 15229292 (-) True G150476
TU189360 lncRNA downstream 105692 15124059 ~ 15124596 (-) False AMCG00000457
TU189312 lncRNA downstream 338582 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 734628 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 980227 14245817 ~ 14250061 (-) False AMCG00000425
TU189382 lncRNA upstream 8472 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 19234 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 29243 15271396 ~ 15273123 (-) True G150504
TU189401 lncRNA upstream 33810 15275963 ~ 15278056 (-) True G150497
TU189421 lncRNA upstream 52066 15294219 ~ 15295205 (-) True G150514
AMCG00000464 mRNA downstream 7643 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000466 mRNA downstream 18417 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000458 mRNA downstream 49771 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000457 mRNA downstream 92365 15124025 ~ 15137923 (-) True AMCG00000457
AMCG00000459 mRNA downstream 121837 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000467 mRNA upstream 11139 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000465 mRNA upstream 37336 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000475 mRNA upstream 47150 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000476 mRNA upstream 55724 15297877 ~ 15309522 (-) True AMCG00000476
AMCG00000477 mRNA upstream 68848 15311001 ~ 15320215 (-) True AMCG00000477
TU189371 other downstream 7545 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 657856 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1403579 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2687978 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3147074 12081543 ~ 12083214 (-) True G149751
TU189419 other upstream 47199 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1565939 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2764943 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3169335 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3170687 18412840 ~ 18413465 (-) True G151088

Expression Profile