RNA id: TU189371


Basic Information

Item Value
RNA id TU189371
length 2653
RNA type TUCP
GC content 0.38
exon number 3
gene id AMCG00000464
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15213402 ~ 15222743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagagagagagagagagagagagagaggggagggagagagagagagagagagagagagagtcttaTTCATTAAGTAAAAGAGGCAAGAATAGTTCAGTatacagagatagagagagacagaaagcaGAAGTGGAGAGACCTGTGGCTTTACTGAGACGCAGTTTGCTATGGCACAGGGTTCTGACAGTAACGACACAAGTTTTACCAGATCTCCATCTCCGGGCAGTAAGCagGATTCCTCAGATGATGTGAAAAAGGtcatgaggagagagaagaacCGCATTGCAGCTCAGAAGAGCAGGATGAGACAGACGCAGAAAGCAGACACCCTGCATCTGGAGAGTGAGAATCTGGAGAAGGAGAATGCTGCCCTGAGGAAGGAGGTCCAGAGACTGACCGAAGAGGCCAAGCATCTGTCCACCGTGCTGAGCAACCACGAGCCCTTCTGCTCGGCACCGTTGAGCTCCCAGACCTCTGACATCCTCTACTCCCCCCACGGGGCCTTCCACCAGGCGCACATCACCTCGCCGCGCTTCCAGCACTGACCACCCGGGGGAGCTGACATGTTATCTCATTGTAGAGTTGGACAGGCAGAGAGGTTTGTGTTCGGGAGGAGTATACACTGGCATGCTCAATCTAACAGGCACAAACTGTCTTACTATCCACTATCCTACCCCCTTTGCTTAAGAGAACCAGATTAACTAGATAACGTTGATTTAGCCTCTGAGCTCACTTAGGgattgaaacaaacaagcagatgATCGCTAACTTCATTTTTACATTCCTGTGTGCAAATCTAATTATGCAAGTGAGCCTTGGCTTTGGGCCCCAGGCTGGAGATACACACTGTCAGCTCGTgtttgtgaaaaagaaaaagaaaagagcttGATAAAATGAAATACCTTCTTGGTGGTTTATACTTGAGATTAAGCAGGTTGGTAAATTTAACTACGGGTAAAAAAAtatcttttgtgtattttgcatacattatttttgttatatttctctTTGCCCAGACAACACGTTCCTGTAGAAATCATATTTTAGACACATTCTGCAATCCTGCAAGGAAGGACTCCACGTGCAAATGAAAAATTCCACAAAGGAATGCATCATGTTTTGGGAATTTGTCTGGAATCAATCAGGATTTTTACTATTGTCATGACAAAAGGTCTATAACACTTGACCCTGTAGAAGTATTTAACTGCTTATGATTGTATGAGCACTGTTGAGAAAAACACACCTacaaacattatattaaattaatataaattatattgaaataagaaaaatgaatgtatttaaaaataaaaccaggctGACTGATTTTATCTGAGGTGCGGGCGAACTATGTTTCCTGTAACGaatgtgtactgtactgtaatctGGTGAGTTTGTATCTTTCAGATATGTCTTAGGTGTATTTTCATGGAGGTCATTATAATCTCTAGATAGATTTGTGGATCTTTACtttgaatgtgttatttatatagaTGGTGTCAATACTGGTAAAGTTGTAcaattgttaatattttgttgGAAATAGTCATCTGTTTATATTCCTTCCACttgaatgtatattgtttatttttgtgtgataTACACTGCCCCCTGGTGTTTCAATAAGAAAGTAATCCCTTAAAAAGTGCAGataatgtaaagaaatatattttgataaaacaTTATAGGATTCATGCTTGTATGTATATAGAATATAGAGCATAAACACTGTCAAAGACAGTTCATGAAAGACATTTTCTAATTGTTGCATTCATCATAAAAGAATGTTTAATagacattgttttcatttaattgaaacaaattgCATCAAATCATTCAATTTTTGAATACAACAGTTCATTGTAACCTATGCTGAAACATGATCTTTTGTGTAGATGTCTACCTCTCCTCCACTTATTTTAGGGGGAAAGGGAATGCTCATTTACATTATTACCTTTTCAGAGTGAATCCACtttcaaacacataaaaaatgcTCTGAATTTATGAAAAGATGCATTTTGGGAATGGCAAACCGCAAATGTGTCCACACACTGATAACTAACCATGTGACGTTTCAGTGTTATCTCTTCTAACGCAGCAACTGGAAGACACCCGATGATCCCAGTGACCAGCAGTCACTCGTTGACTGAACTCAGGGCCTGTTTGAGAGATCACTGTCGATTGTGGTTAGTTGTACTTACTGTAGTTCCTCGAATTGGTAGTGCTAAGTGTATTGCTTTTGCATTGAATTCAAAGGCCTTGAATGTAGTATTTATTCAGATGTATATCTACACTTTAATGACACGtttttttatgatatatatgtacatactaGTCTTTTCATTGACTAAAACAATAGGTTTTGGTTTTATAGGTACATTTATCAGGTCATTAAGACAATcaatagaaaatgaaataaaggcTACAGTCTATAAATGCACACCAGAGGTCACTGTATACCTGTGCAAGCAAGCAGTGATGTGTTACAACCTATTCCGTTATGAATATCCAGTACAGTATTTTTATGGTATTTACTCTACAGAAAGCTAAGAATTTTTGTACTTTGCCTTTTCTTATGGAATTTGTGATAAATTGTATGTTGTTGCCCCTTATGCAATTGTAgcttgttgtttaaaaaaataaagttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189360 lncRNA downstream 88818 15124059 ~ 15124596 (-) False AMCG00000457
TU189312 lncRNA downstream 321708 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 717754 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 963353 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 1059568 14151588 ~ 14153846 (-) True G150219
TU189373 lncRNA upstream 6154 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 27882 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 38644 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 48653 15271396 ~ 15273123 (-) True G150504
TU189401 lncRNA upstream 53220 15275963 ~ 15278056 (-) True G150497
AMCG00000466 mRNA downstream 1543 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000458 mRNA downstream 32897 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000457 mRNA downstream 75491 15124025 ~ 15137923 (-) True AMCG00000457
AMCG00000459 mRNA downstream 104963 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000442 mRNA downstream 148043 15042140 ~ 15065371 (-) True AMCG00000442
AMCG00000463 mRNA upstream 7545 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000467 mRNA upstream 30549 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000465 mRNA upstream 56746 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000475 mRNA upstream 66560 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000476 mRNA upstream 75134 15297877 ~ 15309522 (-) True AMCG00000476
TU189195 other downstream 640982 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1386705 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2671104 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3130200 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 5277864 9930970 ~ 9935550 (-) True G149441
TU189419 other upstream 66609 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1585349 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2784353 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3188745 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3190097 18412840 ~ 18413465 (-) True G151088

Expression Profile