RNA id: AMCG00000465


Basic Information

Item Value
RNA id AMCG00000465
length 4548
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00000465
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15279489 ~ 15288455 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTAAGTGCCTATCACGGGAAGTGCAAGCCAGGCTCCGCTCTGGGATAGCCATCTTCTCATTGACGCAGTGTGTGGAAGAGCTGCTCCTGAACAGCATTGATGCTGGGGCAACGTGCGTGGCTGTGAGGGTGGACATTGAGACGTGCAAAGTGCAGGTGATAGACAATGGCTCCGGTATGGACAGGGAGAACATGGAGCGCGTGGGAAATAGGTACTTCACCAGCAAGTGTGGTTCTCTGGAAGACCTGGACAATCTCAGGTTTCACGGCTTCAGAGGGGAGGCTATTGCCAGCATCGCCGGTTTAGCCACACTGGTGGAAATTTCCTCCAGAACCCATCAGTCGGTCCAAACCTTCGTGAAAGTTTTTAAGGACGGAAAGGGCTTGGATGTGTACGAAGCGGATCTTGCCAGACCGGCAGCGGGCACAACAGTTGTGATCTGCAACTTTTTTCACAACCTGCCAGTGAGGAGGAAAAGACTGGATCCGGTTTTGGAGTGTGAGCGGATCAGGCAGAGGATTGAAGGCATCTCTCTCATGCACCCGTCCGTCTCGTTCTCGCTGAGGAATGACACCACTGGAACCATGGTGGTCCAGCTCTCCAAGACCAGGAACACGTATTTCAGGTTCACACAGATTTACGGTTTGGGGAAAGCTCAGAAGCTTGGAGAGATCACCTGCTCCCATAATCAGTTTGAAATGAGTGGCTTTATAGGCCGTGAGGGCCACTACAACAGTAGCATGCAGTTTCTCTTTGTAAATAAAAGACTACTTTTAAAAACCCGAATTCATAAACTCTTACATTTTCTACTGAAGAAGGTGAGTGTGGCCAACAGGCAGAATGGCAGCCCAACTGTGTCCACTGCTCTTGGGAGTCCAAAGCAGAGGAGTGGCTCAGAGCTTCAGGGGGTCTATGTGATTAATATTAAGTGCCACTATTCAGAGTATGATGTGTGCATGGAGCCAGCAAAAACCCTCATTGAGTTTAGAGACTGGGACAGTGTATTGTTCTGCGTGGAGGAAGGAGTCAAGAAGTTTCTGACCAGGGAGAACTTGGTGGCAGAGCTTTCTCCCGAGGACGTCCATGAGTTTGTCTATGAGAATGCCTTGAATGACCAGTTAGCTTGCATTGATAGTACACAGGGAGGCACTGCAATTGGGGATCCTAAAAGTGTGCTTGACTTTCCGAGGCAAACTCCCGAATGGAAGACTCTGACGTCTAAAACTGTGCACAGATCATTGGCGATAGGTTTTAATGTGACGGAAAGTATGTGCATGGCCAGCGAGGAGGCTGAAATTGTAAAGggacaagaggaaaaaaagaacagtGACCTTGAATCTGTGTATCACGCACTAAAGGAAAAGACACTCGCTCCCAGTGAGACCAAGACTGACGAAACCACTTCTTCTCACGTACCTAGCTCACACAGCTCACAGATTAAAGCCAGTGAAAATCGGCATAGCTCTGCCCCAGATACAGTTAACGCTGTGTCAAAAAACACAGTATTTTATGAATCGTTCAATGACAGTGACTGTATTGACATAAGCAATGCAACAACACAACTGGAAGATGCTGCCTGGAGGACTAGCTCAGATGAAGATACAGTGAAACCCAGTGCAAATACAAATCTGGGAAAAGAGTGTGGACATGGGAGAGACCCTGAAAGAAGTATAGAAAGTGTTGCTTCCTCTcacttttctcattttaaaacacgTAGCACATTTAGTAACGTAATGCCATTTAGCAGTAGTAACCTAGAACTAAGAACTGAAGACCAAACAAACGTTTCAGGAACAACAAAGGTGCAGCTAGCTTCTACAGGCTTCATAAAACATGTGATACTTAAGCCGCATACCAATGAAAAGAAGAGTGAAGTCCAAGAGGGGTTAAGAAGATTCTGTCTCCAGGGACCTGCGAGTGCCCAGGATATCTTCAAACATTCATCTCCAGCAAAGGAGCCCATTCAAACTGAAGCTAAAGAGCACACGAGAGATTCATCTATAGAGTCATTGCAGCAACCAGACACTACATTAACTGTTTCAGCAGATAATACGACATCTTTAGAAGCACCAAAGAGAAAGATATCTTTGGTGGGGGCCCGCGGGACTGCTAGTGGGGGCTACAGCAGTTATAAGGACTTGGTTGAGAGGGTTACCCGGCCTGGTCCTAAACTGTCCTTGTCAGGGACAGCTGAATCTTTAGACAGATTCCGAAGGATTTATGGAAAGCAGAACTTGTCAGGAAAAGAACCCACGCCACAAGATGACAACAACAATCAAAATGCTCCAGATGCCAAAACTGCTCAAGAAGTTTCCGTCAATCCAGAGAACCATGAAATAAATGACAGTGTAGGCTCTGCCCAGCTAAATGACAGCCCTCTTACTCTTTCGGAGTTTACCAGAATGAAACCGATGTCAGCACAAAGCAGTAGCAAGGCCAAAGGATCTCTTGCTACAAAGCTTTCGAAGTTAAAGGGCTATCAGAGGGAGAATGGCTGCAGTATATCGAAGGAGCCACCAGCAGGCATTAGCTGTCCAGTTAGTGAGGGCGTACCGGACAATACTCTAGATAGTGGTAGCAATCTTGAAAAATCAATTCATTCTTCACCTAAAACGATCCCAGACATGAATAAAAATCCACAGTTATCTGAGGTAGGAAACTATAACAAAAAAGAGGAATACCCAGGAGGTGCACATCCTGAATTAAACCAGTCaaataaagacatttcaaaagctGCCCAACACTGGTCTCCTCCTGTCAGTACGGGCGCTAGTAAGGTCTGTGATACTCGTCGCTCAGATGACACAGCTATGGGCCAAAGTGAAGAGGTGTCTTTGTGTGAGGTCATAGACAGCCCCAATGAAGTGAGTGAGAGAGCTGGCTGTGACCCTCCCTCTGCTGAGGATAGATCTGGGGGAGCATCACAACAGAGCAACACTCTGTGTCCGGTGTCAAGGGCCTCCGACTGGGTGGAGCGGTTCGATGCATCTGTAGGGAAGATGGTCTACATAAACATGGTGACAGGACTCAGCCGATATGAAGCGCCTCCTGCTGGAGAGACCCGGGTGCCCTGTGTCACAGACATTACGACCATGGCCGTGAACGTGGTCTCCAACAGAGGTGTTACCCATTTCACACGGAGGCAGTGCTCCCCTTCCTGCCCCGGCCGCGGGGGGAGAGGGTTAGCTCAGGGTGGGACTGCGCAGGTTGCGCTGGATGTGAGCAGTGGGCAGGCGGACAGACTGGCTGTGAAGATCCACAACATCCTCTACCCCTACCGCTTCACCAAGGACATGATCCACTCTATGAAGGCAAGCACATGTGCACTAGTAATCCAACAAGTGGACAAGAAGTTCCTGGCCTGCCTTATACACACAAAAGATAAAGAGGGTGCCAACAGTACAGACTCTGAAGAGGGCAATCTGCTGGTGTTGGTGGATCAGCATGCAGCTCATGAGAGAGTCCGTCTGGAGAACCTCATCATAGATTCCTATGAAGCTCAGCCGGGACAGGCCTCAGGGCAGAAAAGGCTGTGCTCCTCCAGTGTGTCCCCGCCCCTGGAGATCGATGTCACTGAAGAGGAGTTCAGGATGCTGCGATCCTGTCAACCGTTCCTGAGGGACCTGGGGCTGGAGATGACGTTTGCAGAGGATGGAGGCCCCAGGGTGCTGGTGGGGAAAGTGCCCGTGTGTTTTTTGGAGAGGGAGGCCAATGAACTGCGGAGAGGGAGACGGACTGTCACCAAAGCCATCGTGGAGttaCTCCACTCGACAGGCCGAGTGCGAGGGACTCTCCCCCTAACGGTGTTAAAGGTTCTTGCTTCTCAAGCCTGCCATGGAGCGATCAAATTCAATGACAGCCTGAGCAGGGAGGAGTGCTGCAGGTTAGTGGAGTCGCTCTCGGCCTGTCAGCTGCCCTTCCAGTGTGCCCACGGCAGACCCTCCATGCTCCCACTGGCTGACCTGGACCACCTCGACACAGAGCCACAGGATCCTCCGAAACCAAACCTCATGAAACTCAGAAGGATAGGCAGCAGAGTGCGTCTTCATGGCAGTGCTGTACGCTACCTGCGGGGACAGCTTGAACATGGGTGCGCACACGATGAGCGGCGTAGAGTGGTGCTTGGCTGCCAGAGCCAGCGTGTGAGTGCCATTGACCGCCCTCAGACCCCCGTTAGCCAGGACCGTCTGTGTGCCGATGATCACCTGCAAAGACGTCACCTGGCAGAAGGGTGCGCACTCGGCGACGATGACGTGGAATTTGCGTTTGCGAGCGGCGTCCTTCAGGAAGGCCTCCACGACTACGGTCGAGCGTCTCTGATCCAGCACCGTACCGAGTTCTGTGAGGAGCTCGTTGATGGCCTCGATCACGTTGGCCTTGAGCGGGGGGAATTGCTGCCTGAAGTTCTCCTCATTCAACCCCCCCGAGGTGAGCAGCTTGTGCAGCGATTCCTGCTGGTCGGCTTCCTCACTGCTGCCCCGGGacctacagacacacaggaacAGACTCTCACGGCTGCCCTATATCCAAAGATGACCCTATAG

Function

GO: NA

KEGG:

id description
K08739 MLH3; DNA mismatch repair protein MLH3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189401 lncRNA downstream 1433 15275963 ~ 15278056 (-) True G150497
TU189409 lncRNA downstream 6366 15271396 ~ 15273123 (-) True G150504
TU189406 lncRNA downstream 15913 15261387 ~ 15263576 (-) True G150502
TU189382 lncRNA downstream 28660 15250625 ~ 15250829 (-) True G150485
TU189373 lncRNA downstream 50197 15228897 ~ 15229292 (-) True G150476
TU189421 lncRNA upstream 5764 15294219 ~ 15295205 (-) True G150514
TU189478 lncRNA upstream 173391 15461846 ~ 15467306 (-) False AMCG00000482
TU189486 lncRNA upstream 209717 15498172 ~ 15527390 (-) True AMCG00000469
TU189508 lncRNA upstream 278304 15566759 ~ 15568750 (-) True G150581
TU189513 lncRNA upstream 290434 15578889 ~ 15580921 (-) True G150586
AMCG00000467 mRNA downstream 23660 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000463 mRNA downstream 37336 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000464 mRNA downstream 56844 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000466 mRNA downstream 67618 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000458 mRNA downstream 98972 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000475 mRNA upstream 848 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000476 mRNA upstream 9422 15297877 ~ 15309522 (-) True AMCG00000476
AMCG00000477 mRNA upstream 22546 15311001 ~ 15320215 (-) True AMCG00000477
AMCG00000480 mRNA upstream 95202 15383657 ~ 15390950 (-) True AMCG00000480
AMCG00000479 mRNA upstream 103414 15391869 ~ 15411274 (-) True AMCG00000479
TU189371 other downstream 56746 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 707057 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1452780 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2737179 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3196275 12081543 ~ 12083214 (-) True G149751
TU189419 other upstream 897 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1519637 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2718641 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3123033 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3124385 18412840 ~ 18413465 (-) True G151088

Expression Profile