RNA id: AMCG00000466


Basic Information

Item Value
RNA id AMCG00000466
length 2661
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00000466
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15187199 ~ 15211871 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACGAGACTGAAATAAACGATAACAAAGATGTCCCCAATTGTGACAAGTCGGTCCACACGGAGAAAGACCAGGACCCCCATCTGCTCGGTGACTTACAGAGACTCTCCAATGGCAGAGCCGACTCAGCCCCGGCCACCCGTCTGTACAAGAGGCGCTGGGCCATCGTGTGCCTGTTCAGCGCCTATTCCCTGTGCAACTCTTTCCAGTGGATCCAGTATGGCATCATCAACAACATCTTCATGCACTTCTACAGCGTGGACTCCTTCACCATAGACTGGATGTCCATGATCTACATGCTCACCTACATCCCCTTCATATTCCCCGTCACCTGGCTGCTGGACAAGAAGGGGCTGCGGGTCATCGCCCTGGCTGGAGCCGCCCTCAACTGCCTGGGCACCTGGATCAAGGTGGCCAGCGTGAGACCCGACCTGTTCGGGGTGACCATGTTCGGCCAGTTCTCCTGCTCCTTCGCCCAGGTCTTCATCCTCGGCATGCCGTCTCGGATCGCCTCGGTGTGGTTCGGCTCGGAGGAGGTGTCCACTGCCTGCTCCATCGGGGTCTTTGGCAACCAGGGGTATAACCTGGAGAAGCCCATGAAGACTGTGGAAAACTGTGGAACCAAACTGCTAGATCTCACAGATGGAGGAACCCCCATAACTGATCCAGAAATACCTCCTGAGGCCCCAAGGCAGGAACTAGCTGGTCCCAGCCCGGTTGCGGCCGTCCACCTGTACAAGCGGCGCTGGGTGATACTTTTCCTCTTCAGCTCCTACTCCATGTGCAACGCCTTCATGTGGCTGCAGTATGGGATCGTGAGCAACATTTTCATGAGGTTTTATAGCATAGACTCCTTCACCATCAACTGGCTGTCCATGATCTACATGCTCACCTACATCCCCCTGATTGTCCCCGTCATGTGGCTCCTGGACAACCGAGGCATGAGAGACGTGGTCATGGCTGGATGTGCTTTCAATTGTATTGGGGCCTGGATCAAAACCGGCAGCGCTGCCCCGAACCTCTTCGCGGTCGCCTTCTTTGGACAGTTCGTATGTTCTGTGGCCACTGTGTTCGTGCTGGGCATCCCCTCCCGGCTTGCCTCTCTGTGGTTTGGAGAGCAGGAGGTCTCTACGGCGTGTTCCATCGGTGTGCTAGGAAACCAGCTGGGCATTGCTATAGGATTCCTGGTGCCACCTATGCTGGTTCCTAACCTGCAAGACAATGACCAGCTGGCCCACTACATCAGCATCATGTTCTACGGGACGGCGGCCGTGGCGACCCTGCTTTTCGTCCTTGTCGTCATTGTCTTCCAGGAGAAGCCACCCATCCCACCCACCCAAGCCCAGGTTGCCATGAGGAATGTCCCGGAGGAGGATTACTCCTACATACAGTCCATCCTGCGCCTCCTCCGCAACATGCCCttcatcatcctcatcatctCCTACGGACTGAATGTTGGCTGTTTTTATGCTGTGTCTACCCTGCTGAACAAGATGATAATTGAGCACTACCCTGGTGAAGAGGTGAACGCTGGCAGGATTGGACTCACTATTGTCATCGCAGGGATGGTTGGGTCTCTCATCTGTGGCATTTGGCTCGACAAGACGAAAACCTACAAACAGACGACGCTGGCCGTGTACGTGATGTCCTTCATTGGGATGGTGGTGTATGCCTTCACTCTGGATCTGGGGCACTTGTGGGTGGTGTTCATCACAGCAGGCACGCTGGGATTCTTCATGACTGGTTACCTGCCCCTGGGCTTTGAGTTTGCAGTGGAGCTGACGTACCCCGAGTCTGAGGGCACCTCCTCGGGGCTTCTCAACTGCTCGGCCCAGGTGTTTGGCATCATCTTTACCATCTGTCAAGGCAAAATCATCGACCGCTTTGGGACGTTAGCTGGAAACATTTTCCTCTGTGCATTCCTTCTATTAGGGTCCATCATGACAGGTTTTATAAAGTCCGATCTCCGGAGGCAGAAGGCAAATCAGGCAGCAGCGGCCAGTGAGATGCTCAGTGTGTTCTCCAGAGCTTGCAACAGTAGGATAAGTGTGCGTAACGACACCTGCCCATTTAACAGCAAATCAGTCCTGGAAACCTGCCCAGCCTGGCAGCGTCTTGCGATGAAACCCCAGCAACTGGACAAATCCTGTCACTTATTCTTCACCTCTCCTGGCAATTATCTAtcttgttttttggttttccaTGTGCTGGGTGTGGGGAATTCATACGATTTGACCTTCTACAGTAATCTTGAATGTTACCTTGCTCGACTGGAGGGGGGTCACAATGTTGGTCTGAGCAGCGTGTTGGTGCTGCTGTGCGTGACCCCAGCTGTTGTTCCAGACTGCAGCTGCTGTCTCCCCACATCAGGATTATGGGGCCACAGCGCCCATCAACCCCCAGTTGCTGCACCCTTGATCACTAACCCAACCACACTAAACACAAAAACCTCAAGAAGGCGTTGCAGCCTTCCTGGCCCTGTGGCACGATGCGTGATGGGAAGCTGTCCGCATTTCCGCTCAATTGCGTTTCTTCTGCCTCGCCCCCACCACTTCCTGGGGTTCTGCCACGCACTGCAAGCCAATCAGCATCCCCACGATGGAGAAACCTGCCACAGTGAAGACGGGACCGTTATGGAGACCGATAAATCTGAATACTGA

Function

GO: NA

KEGG:

id description
K08220 FLVCR, SLC49A1_2; MFS transporter, FLVCR family, feline leukemia virus subgroup C receptor-related protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189360 lncRNA downstream 62603 15124059 ~ 15124596 (-) False AMCG00000457
TU189312 lncRNA downstream 295493 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 691539 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 937138 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 1033353 14151588 ~ 14153846 (-) True G150219
TU189373 lncRNA upstream 17026 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 38754 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 49516 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 59525 15271396 ~ 15273123 (-) True G150504
TU189401 lncRNA upstream 64092 15275963 ~ 15278056 (-) True G150497
AMCG00000458 mRNA downstream 6682 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000457 mRNA downstream 49276 15124025 ~ 15137923 (-) True AMCG00000457
AMCG00000459 mRNA downstream 78748 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000442 mRNA downstream 121828 15042140 ~ 15065371 (-) True AMCG00000442
AMCG00000446 mRNA downstream 210777 14954668 ~ 14976422 (-) True AMCG00000446
AMCG00000464 mRNA upstream 1531 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000463 mRNA upstream 18417 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000467 mRNA upstream 41421 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000465 mRNA upstream 67618 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000475 mRNA upstream 77432 15289303 ~ 15291255 (-) True AMCG00000475
TU189195 other downstream 614767 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1360490 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2644889 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3103985 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 5251649 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 1543 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 77481 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1596221 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2795225 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3199617 18411488 ~ 18412525 (-) True G151087

Expression Profile