RNA id: TU189419


Basic Information

Item Value
RNA id TU189419
length 852
RNA type TUCP
GC content 0.38
exon number 3
gene id AMCG00000475
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15289303 ~ 15291255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCGCCGGCTTGCAAGGGGACAGTTTTTCGCGCAGTGATATTAATCATATATTAGACTGAATTGCCTTCTTTGCAAGTTTTAACAACTGGCTTGGCAATGTCTGATAAAGATCTGATTTCAGTGGATTATGAAGTTTTTGGAAAAGTGCAGGGCGTGTTTTTCCGGAAGTACACTCAgGCTGAAGGAAAGAAGCGGGGCTTGGTAGGCTGGGTGCAGAACACCAAGGACGGGACGGTCCAAGGGCAGCTCCAGGGTCCCAGCAGCAAAGTCAGTGCAATGCAGGAGTGGTTGAGAACCACAGGCAGTCCCAAGTCGCAGATCACTAAAGCAGAGTTCAGGAACGAGAAGACCATTGAAAGCTTGGATCATACAGATTTCAGAGTTATCCGACCTTAACATAGCATGtatcaatttaaatgaaataccaCAATTCAGTTTGTTTGAATGGATGGTCATGTGGTGGCCTGTACTAACTGAAAAAAGGCACATTATCCCTGTTACAacttgaaacattttttttaatgcattgttttccatGTGGGCActtatttcattcattatttattttgtacaaattaAGCTTAACTCAGTAAATTGTTTCAGCTCTCCATTGTAGACATATTTATCACATACTGTCAGTCtctgtttataaataatgttagATATGGCAGCTTTATTATGAGTCAAACTTGAACACATAAACATTaagtttttttctctgttgCTTTTGTGAAAATACAgggtatatataatatatgaaaataatatacattcatATCGGCCTATGTATTGGAAACCTATATGAGCTTTTTAGGTTAGAACTCCATAAGAGACATTAAAGAAAgtgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189401 lncRNA downstream 11296 15275963 ~ 15278056 (-) True G150497
TU189409 lncRNA downstream 16229 15271396 ~ 15273123 (-) True G150504
TU189406 lncRNA downstream 25776 15261387 ~ 15263576 (-) True G150502
TU189382 lncRNA downstream 38523 15250625 ~ 15250829 (-) True G150485
TU189373 lncRNA downstream 60060 15228897 ~ 15229292 (-) True G150476
TU189421 lncRNA upstream 2983 15294219 ~ 15295205 (-) True G150514
TU189478 lncRNA upstream 170610 15461846 ~ 15467306 (-) False AMCG00000482
TU189486 lncRNA upstream 206936 15498172 ~ 15527390 (-) True AMCG00000469
TU189508 lncRNA upstream 275523 15566759 ~ 15568750 (-) True G150581
TU189513 lncRNA upstream 287653 15578889 ~ 15580921 (-) True G150586
AMCG00000465 mRNA downstream 897 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000467 mRNA downstream 33523 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000463 mRNA downstream 47199 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000464 mRNA downstream 66707 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000466 mRNA downstream 77481 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000476 mRNA upstream 6641 15297877 ~ 15309522 (-) True AMCG00000476
AMCG00000477 mRNA upstream 19765 15311001 ~ 15320215 (-) True AMCG00000477
AMCG00000480 mRNA upstream 92421 15383657 ~ 15390950 (-) True AMCG00000480
AMCG00000479 mRNA upstream 100633 15391869 ~ 15411274 (-) True AMCG00000479
AMCG00000481 mRNA upstream 124294 15415530 ~ 15419570 (-) True AMCG00000481
TU189371 other downstream 66609 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 716920 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1462643 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2747042 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3206138 12081543 ~ 12083214 (-) True G149751
TU189692 other upstream 1516856 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2715860 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3120252 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3121604 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 3122819 18414055 ~ 18414558 (-) True G151089

Expression Profile