RNA id: AMCG00000476


Basic Information

Item Value
RNA id AMCG00000476
length 5287
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00000476
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15297877 ~ 15309522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCACGATCGCGGCTCAAATCGGAGCAGCTCGGCGAACACAAGCGACCCCCCGCAGCCTCTGcacggtgtgtgtgtgactccGCCGGCCCGGTGCCCGGGCTGTAGCAATGCATGTACACGGCGAAGTGTTTCCGGGTCTTGAGCCCTTGCGGGGTAAGATGGAGGCTCCGTGCAGATCGCATTGACTGGGAGAAAAGTTTGTGCGCCTGAAAACTTTAGATGCATCTCAACCTGGGAGCAGCGAAACAAATCCGACATGAAATCCATGCTCGACGCGagggattgaaaaaaaaaaaacacaagcaaaaccAAAAACGCAAGCAGCCCGTAAGAGGCCAAGTTGCAGAAGCTGAGCTGCGTTAGGGTTATGCACTGTGTTTTCACTTTACTTTATGATCCACGGGACGTGCCTTTAGAGTGGATTTAAACAGGACTAGTATTAGAAATGGCAacccgtttgtttgtttgagccGTGTCTGATTTAATAATATGCATGGAAGTCAATTGTGTCTGaaacacacagctgtgttttGCAAACTAAATATAAACCGTCAGCACTGTTGAGATTGCACGAACGTTACCGGGACGTTTTTGGAACGTCGCCCagaacaaagaaacacattctCGACTTGTTCTAAAATAACCATCTCCATTGGTATATGTACAGCTTTTCGTTCTCTTTGAAGTTGCTCGGTTTCAGTTACTGGAATAGCGACAAGATGTCTTCTGAAGAGCACGAAAGGCGCTATAGCTCCTTGAACTCGGATTTTGGGAGCGACCTGAGTGGCAGTGAGCGGAGGTCTGCGTCCGGGGGCTACAGTGGAGAGGAGGAAAAGTTGCATTACATCCCCATCCGGATCCTAGGCAGAGGGGCATTTGGGGAAGCCACCTTATACAGAAGAACTGAGGACAACTCGTTGGTCGTGTGGAAGGAAGTGGACCTGAACTGCCTCTCGGACAAGGAGCAGCGCGACGTGATGAATGAGATAAACATCCTGTCCATCCTGCAGCACAACAACATCATCGCGTATTACAATCACTTCCTGGACAAGAACACCTTATTGATCGAGTTAGAGTACTGCAACGGGGGAAATCTTTATGACAGAATTAATCAACAGAAAGGAAAGCTCTTTACAGAAGAGGTTGTGATTTGGTATCTGTACCAAATCACTTCAGCTGTGGCTCACATCCACAAAGCAGGAATTCTTCACAGggatatCAAGACACTGAATATTTTCCTCACCAAAACCAACCTGATAAAATTGGGTGACTATGGGCTGGCCAAGAAACTGGACTCCCAGTATTCCATGGCTGAGACTTGTGTAGGAACTCCATACTACATGTCTCCAGAGCTGTGCCAAGGGGTCAAGTACAACTTCAAATCTGACATCTGGGCGATGGGCTGTGTCATCTTCGAGGTTCTGACCCTGACCAGGACGTTTGATGCCACGAACCCACTCAACCTGTGTGTGAAGATCGTGCAGGGCAATTGGACCATGCAGGTGGACTCCAACGTGTACACCCCCGAGCTCATCAAGATGGTGTACGAGTGCCTGGATCAGGATCCCGAAAAGAGGCCCACAGCCGACCAGATCCTGGAGCACCCAATCATCTACAACCAGCGCCAaaagCTGGATGAGAAGGTAGCATTGCTCAATATGGCCAACAAGAAACCAAAGTTGAACACAGTAACTGAGAGCCCTGTTGCCGTTGTGACCACTCGCTCCAGAGAGGTGTATttctggggaggggggaagTTCACCCCCCAGAAGCTGGACTCCTTCAAAGGTGGCAGTAGTGCCCAGCATGTGTGCGCCGGGGAGACGCACTTTGCTGTGGTGACGGTGGAGAAAGAGCTGTACACCTGGGCTAGTGTGCAGGGTGGGGCGAAGATGGTGGGGCAGCTTGGCCACGGGGATCAGGCCTCCTACCGCCAGCCCAGGAGGGTGGAGAGGCTGCAGGGCAAAGCCATTCGCCAGGTGGCCTGTGGAGCTGACTTCACTGCCTGCGTCACTGATGAAGACCAGATGTACATGTTTGGCTCGGATTACTACGGCTGCATCGGGGTGGACAATGAGCTGGGCATGGAGGTCCTGGAGCCCGTGCTGCTGGAGTTCTTCCTGTCGCGGCCGGTCAGGCAGGTCTGCTGCGGGGACAACCACGTGGTGGTGCTGACCCAGGACCGGGAAGTAGACCTACCCAAGAGTGTGATCATCTCCTCGGTTCGCTGTGGCTGCGACGGCACCTACTTCCTGACCGAGTCGGGGAAAGTGCTGGCCTGCGGGAACAACGAGCTGAACAAGCTGGGGCTGAACCAGGGCATCTCCGGGATCATGAACCACTCGGGGGAGGTGAACCAGGAGATCCCCTACACCACCTCCCTCACGCTGGTCAAGCAGCTGGCGCGCTTCAAGGTCAGATGCATCGCCCCCGGCAAGACGCACACAGCGGCTATCGACGAGCGCGGGCGCCTGCTGACATACGGCTGCAATAAGTATGGCCAGCTGGGCGTGAGGGACTACAAGAAGCACCAGGGTGTCAACCTGCTGGTGGGGCCGTTTGGGGGCAAGGTGGTCACCAAGGTGTCCTGCGGAGATGGCTTCACCATTGCAGCTACAGAAGACAATCAGATTTTCGCCTGGGGGAACGCTGGCAATGGCCGGCTGGGAATGCCCCCCGATAAGGGCTTTGGCTCGGAGGTCTGCCCTGCTCTGCCGCGCCCTATATTTGGTTCACTGCACCATGTGCCCGACCTGTCCTGCAAAGGCTGGCACACTATCCTCATCGTCGaaaaggtGCTGAATTCAAAGACTATCCGTTCGAATAGCAGTGGACTGTCTATTGGCAGTGTGGGGCAGGGCTCCACATCCACCATCGACCTGGATAGCGAGCACAGCTCAGAGGCCCCCCTGCGTGATGGTGGCTCGGGGGGCACGGTAGAGGCGGACACGGGGATGCACGGCTTAGAGACGCCCATAATGTCTATGACGAGCGAAACTGACAGCTCCTGCCCAATCTGGTTGCGCCAGGAGCTCCAGGATGCTGAGTTCATACCCATGCCCCCCAGCCCTGGCGACTCCCTGCCCTCGGCTCTGTCCTCGCCCATCTCCGAGAGCGCCACTCTGCCCTACAGTGAGCTGCAGGAGCTGAAGGCGGCAGCCGCGGCGGCAGCGGAGAAGGGACTCTCGACGGCTCGAGTGGGCTGCGAGAAGGTGAACGGGGTGGATGAGACGGCAGCTGGCTGGAAGAAGAGCAGTGAGCCACAGTGCGAGAAGAAGCTCCAGGCGCCAGAGGAGGGCTGTGGCAGCGCAGTGAGCAGTGAGCTGGCACAGTTAAAAGAGACGGTCAGACAGCAGGAAGTCATGATCCAGATGTTACAGAAACAGTTTAGCGAtcaactgaaagaaaatgagaaGTTGTGGAAGGCCATCGAGACCCTGACTCTGAGCACTGCAAGATCCGAGACGAACAACAACCACCCGGCAGACCGAACGCCAGAGGAGGAGGGTGAGGAACCGGACAGAGCAGCGAGGGACAGTCAGTAGTCTGGACCTGCACTGGACCAGCGGACGCTAATACCTAGACCATTGGATCCTGGCCAGTTCAACACAACTACACAGGCCAGGTTTCCAAGAGTTGGGCTCAGCTGCAGGGTAGAGAGGATTCTTTTCTGCTGCCAGAGAGTGGCTGAGATACGTTTGATAAGAGGGATGTGCTAAAAGGTCAGAAGAGGTTGTGCAAAAAAGGTTTTTGTGCTCACTTATACGTTGTGCTAGTGCATGCCAGGAGGTAGTGAGGTGATACGGTGATTGGAAGGTGTGGAATTGTGGCGGAGAGTTCATGAAACGAGGGGTGGCGAGGGTTAAAGGTTGCTTTTCTTCAGTTTAAGGTGATAATCTATGATCCATGCATGAGTCTTTCTTCAGAGCAACTCCTGTGGGCTGAAAATTGACGCGCGTCACACTATCCATCAGAAAGTTATGacttcattctttattttcactAAATAGAAGTTCTCAAAACACATTCTTATCTGCATAGCTATGGAAAAAGTACTATAAGAAATAAAAGGATTTGTGTACTATACTATAAGTACTATAAGAAATAAAACGGTGTGTTTACTATCATCCAGGAAACCAGTTGTAATGTGGTGTAACAACAGCGTTACGTAGAATTGCTCTCTGTACTGATCACGGTTACAACAGTCAATGAAACCTGGTTATTAGTAAACGAGCTGACGGAATGCGTCAGGGCAGACATTCGTAAGATGGACATACCAGGATGCTGGCAGAATTCATTAAACAAGATTTCACAGAACCTGACATGGTTATCTGGCTGTCCAGAGTGAACCCTTTGACCTTATCAGCCAGCACTGTGCCCCTTTTCTTTGGCACGATGTAAACTGTTTGTGGCACCTCCTGTTAGTGGAGATCATGTGATATCGTACTACTGTTTAAACAGTTTGTTTCCAGGCTGTACGTTGAGTTTATAAAGCTGCAAAGGGCTTGAATAGCAGCAAGGCATGCTTTACCTCATGGTGGTGTGGTGGTGCATCAGGTCTCTGGTCAGttaaaaagtgcatttcttATTACCACTTTGTACCAAAAGAGACTCCTAATAAGTtaccacttttttgttttgtttaagattcaccttttaaaggaaaagaaaatcttaTGATTTCTAGGATTCGCTTCAGATGATCTGTATAAGCTTGTGAAAGTTTTATAACTGCTGGCTGTGTGAGGATTTTGGGTACAATGctcaaattagattttattatttttttcaaaaaacaatatgCACCAAAGGTTTTATGATAACAGCTCCTTATTAAGCAATGTAtcacaaacatgaaaaacttaatataaaacttaaaaacatttactttcataATTAAGATAAAATATAGACCATTTTTGCCTAGGCAGTATATGCATAAGCCTTACTAATATTCTAATACTGTCATCTTTATATTTTTGAGACTACTTCAGAagttttttcatttcctttaagACACCGTTATGATAATTATAACATTCTAATATTAGTTAGTGTGCTTTTTTTAGTTAGTGAACACTCTGTATTCaggccttttattttttagaattgtgTGAATGATTGTGAATTGTTTTTTGAACTGTCATAATCTAAATGCCAGGGTAGGTGACAGTCATACTACTGATAAAATCTGTTTtgggtgttgttttttcttttcttttttactgtCCTAGTGAAAAtggaataatgtttttatttctatgtgGTCTTGCTGGGGGGGGGGG

Function

GO: NA

KEGG:

id description
K20878 NEK9, NERCC1; NIMA (never in mitosis gene a)-related kinase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189421 lncRNA downstream 2672 15294219 ~ 15295205 (-) True G150514
TU189401 lncRNA downstream 19821 15275963 ~ 15278056 (-) True G150497
TU189409 lncRNA downstream 24754 15271396 ~ 15273123 (-) True G150504
TU189406 lncRNA downstream 34301 15261387 ~ 15263576 (-) True G150502
TU189382 lncRNA downstream 47048 15250625 ~ 15250829 (-) True G150485
TU189478 lncRNA upstream 152324 15461846 ~ 15467306 (-) False AMCG00000482
TU189486 lncRNA upstream 188650 15498172 ~ 15527390 (-) True AMCG00000469
TU189508 lncRNA upstream 257237 15566759 ~ 15568750 (-) True G150581
TU189513 lncRNA upstream 269367 15578889 ~ 15580921 (-) True G150586
TU189515 lncRNA upstream 309699 15619221 ~ 15619788 (-) True G150588
AMCG00000475 mRNA downstream 6622 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000465 mRNA downstream 9422 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000467 mRNA downstream 42048 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000463 mRNA downstream 55724 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000464 mRNA downstream 75232 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000477 mRNA upstream 1479 15311001 ~ 15320215 (-) True AMCG00000477
AMCG00000480 mRNA upstream 74135 15383657 ~ 15390950 (-) True AMCG00000480
AMCG00000479 mRNA upstream 82347 15391869 ~ 15411274 (-) True AMCG00000479
AMCG00000481 mRNA upstream 106008 15415530 ~ 15419570 (-) True AMCG00000481
AMCG00000482 mRNA upstream 155802 15465324 ~ 15479049 (-) True AMCG00000482
TU189419 other downstream 6641 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 75134 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 725445 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1471168 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2755567 12522520 ~ 12542310 (-) True G149847
TU189692 other upstream 1498570 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2697574 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3101966 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3103318 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 3104533 18414055 ~ 18414558 (-) True G151089

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000360_00667891_00672778.mRNA True 1108 mRNA 0.54 10 CI01000360 667891 ~ 672778 (+)