RNA id: AMCG00000481


Basic Information

Item Value
RNA id AMCG00000481
length 738
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00000481
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15415530 ~ 15419570 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCGAGAAAAGATAATGACCAAAAGCGAAGGGAACGGATGAGCAAGGAGGTATCCAGGTATGAGAGAGAGGTCCTCTCAGCCCAATCAGCCTCACAGAAGAGCTCAAGAAGTAACAGCAGGCCTCCTTCTGCTGACACCATCCAGAGTAACGCATCCTTGCAAGATAATGGTGATGAGAGTCTTTCCCCTTATCTGCAGAGACAGCTGCTTTCATCTCCCAGATTTGTAACATCTTTCCATTCGAAGCAAACTGCATATCCACCCAGAACCGTCAACATGGCCGAAACCCCCTCAAAGATCTTCTACCGATCCTCTTCAGAATTAAGCTGTAGTCCCGCTAGAAGGGGGCAGCATTCGGCCCGCTCTTCTTATGATTCTTCCAGCAGCCTTTTAAAGTCTCCGAATGTGTACAAGTCTTTTCAGGATCCGAATCAAAAGACGTACAGCGGAGATCTCCTACAAAAGCATTCCTATCACTTTACAGAAGACAAACCTTTCACACCGCGGACGCTGAAAAAAGACACCAAGTCTTTTCTGTCACAGTACAGGTATTACACCCCACCTAGGAGGAAACCTGCAAAAGAAAAGTCCACTTTAATGGTCAATCAGGACACACAAACGGACCATGAAAGCTCCTTTGATAAAGCAGGGTCGCCCCCAGACGAAAGACGTTTAACTCAGGTTATCGACATTAAGGACACAATCTCCGACCATGAGGAAAGTCACGGATGA

Function

GO: NA

KEGG:

id description
K19655 SPATA7; spermatogenesis-associated protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189421 lncRNA downstream 120325 15294219 ~ 15295205 (-) True G150514
TU189401 lncRNA downstream 137474 15275963 ~ 15278056 (-) True G150497
TU189409 lncRNA downstream 142407 15271396 ~ 15273123 (-) True G150504
TU189406 lncRNA downstream 151954 15261387 ~ 15263576 (-) True G150502
TU189382 lncRNA downstream 164701 15250625 ~ 15250829 (-) True G150485
TU189478 lncRNA upstream 42276 15461846 ~ 15467306 (-) False AMCG00000482
TU189486 lncRNA upstream 78602 15498172 ~ 15527390 (-) True AMCG00000469
TU189508 lncRNA upstream 147189 15566759 ~ 15568750 (-) True G150581
TU189513 lncRNA upstream 159319 15578889 ~ 15580921 (-) True G150586
TU189515 lncRNA upstream 199651 15619221 ~ 15619788 (-) True G150588
AMCG00000479 mRNA downstream 4256 15391869 ~ 15411274 (-) True AMCG00000479
AMCG00000480 mRNA downstream 24580 15383657 ~ 15390950 (-) True AMCG00000480
AMCG00000477 mRNA downstream 95315 15311001 ~ 15320215 (-) True AMCG00000477
AMCG00000476 mRNA downstream 106008 15297877 ~ 15309522 (-) True AMCG00000476
AMCG00000475 mRNA downstream 124275 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000482 mRNA upstream 45754 15465324 ~ 15479049 (-) True AMCG00000482
AMCG00000469 mRNA upstream 81401 15500971 ~ 15527014 (-) False AMCG00000469
AMCG00000472 mRNA upstream 197393 15616963 ~ 15619029 (-) True AMCG00000472
AMCG00000494 mRNA upstream 833567 16253137 ~ 16266313 (-) True AMCG00000494
AMCG00000493 mRNA upstream 857428 16276998 ~ 16278955 (-) True AMCG00000493
TU189419 other downstream 124294 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 192787 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 843098 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1588821 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2873220 12522520 ~ 12542310 (-) True G149847
TU189692 other upstream 1388522 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2587526 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 2991918 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 2993270 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 2994485 18414055 ~ 18414558 (-) True G151089

Expression Profile