RNA id: TU189478


Basic Information

Item Value
RNA id TU189478
length 2069
lncRNA type sense_over
GC content 0.37
exon number 3
gene id AMCG00000482
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15461846 ~ 15479049 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgtgtgtgtgtgtttttcacaatAGATTTGCTACTGCATTGTAAAGTTctccatttttacatttttcattttcaaaactgttatTTGAGCGGTGCAGAAGTTCAGGTTGTAATTTATTTGCTGGAAGAGGCTGGAAACTGCTTTCTATTTGCCAACATTTTTCACATGAGGAGttccaCAGGACAAACATGAACATTACCAATCTGACAAATGCTACGTCTATGAGCAACAATGACAGTTGCACCATTGAGTATCATTCTGAAAGCTACTACTTCTTCTGTGTCTATATTATAATCATGCCGATCAGTATTCCGACAAACTTACTTTCCCTGTATGTATCTTACAAACACATTCAGAGGAAGAACGAGCTGGGCGTCTTTCTCTTTAACTTATCACTGTCAGATTTGCTGTACACAATGACTTTGCCAATATGGTTGGATTTTGTTTGGACTGATAAGTGGAAACATGGAGAATATagcccgctccatctcatccctggcccctaaatggtggagcgacctgcccaccgaagtcaaaacagcagagtccttgacctcattccgacgcttactcaagacgcatcttttccgacagcacttgtaatattagtcctctatccctgctagataacacttcacagtttttattacgctcctcgcgttcttgattgttttcctccttgctccctttcccgaaacccttgtctgtaaccctacatcttgacagcacttagctttcaccgtccaggatgtaggaagtcacttactgtacttgtgtaaattgcaaattggaatttgtaaaatgtattattttgaattgctgttttagctaaattgaatttgtaatgattgatgccttgtacttcactgtatttttgcactttgtttgcacttatgttgtaagtcgccctggataagggcatctgccaagaaataaaaataataataataatgtagataTTAGATTAATATTctgttgaattttaattattcagcagttgaatgttaatagattatgtcttgaatatttgtttaacattaaacCTACAGCGCTTAACACTTTCAAATAGCTTATCGTGATCAACACAGCGCATAAAGAAACGTCTACTGCAGTAGTGCAATGTAACGACACTTAAGGCGTAGTTTAGTTCCCTGTTTTATGAGGTCCAGGAAATGTGGTACCTCAGACACACTGGTTTCCGTTGCCTTGGCAACAGGTAGCCTGTGCAGTATGGTGGAATATGAGAATATCACAGCTGATCATCAATCTCAGGATCCTAACCTGTCAAGTACAATAATAGCTTCAGTTTGACCCTCCATCCCTTTCTTCTGAGTGATTGTCATAGGTGTTACAATCTGtacataaacagaaaacatgtaatttgaCAACTTTTAagaatgttgtattttgttaatacaatgtaattattattcatttatttttaaatgtaattgatcattttttctgaaaatgataGGGAAATTGATTCTTGAGTATGTTCACGTTTCCATACATTTGAATTATGAAATGAAGTGTTGaatttttatacagttttatacacCGATTTGTATACACTGTGTCCTTAAAAATGTCAGCATGTGCTTTCAGCATTTGGTAATTAACCAGAAGCTTTTCTGAATGTACAGACTTGGCTATTGTGcataaatgaaaatgagaagGTAATTGGCTCTCCTATTGTCCCAGCCTCTTTGTTTATTCACAGTTGATGTGACAACCTGTAACTGTCAAAGTTAATAGACCAATCTGATGTTTTGACTTGCCCCCTTTCGTTTCTATTCTATTTTTTCCAAGGAAACAATATCAGCATGAGTTATTTCTGAGTTACAACATACGGGAAAGCTCATGGGTAGACATGGGACACAGTGAGGCAAAGCTTATACTGTAAGTGTTGTGCTGCTTTCTGTTCTCAGAGAGTTCAAAAATAGAAGTGGCAGATTGTCTCCACACTTCCTGTTTGAGGGTTTGAAGGGTTTGCAGCTCTGAGGCAAGAAGTATCACTTAACACATATCACCAATATACATGTATCACTTGTGAAATCTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189421 lncRNA downstream 166641 15294219 ~ 15295205 (-) True G150514
TU189401 lncRNA downstream 183790 15275963 ~ 15278056 (-) True G150497
TU189409 lncRNA downstream 188723 15271396 ~ 15273123 (-) True G150504
TU189406 lncRNA downstream 198270 15261387 ~ 15263576 (-) True G150502
TU189382 lncRNA downstream 211017 15250625 ~ 15250829 (-) True G150485
TU189486 lncRNA upstream 30866 15498172 ~ 15527390 (-) True AMCG00000469
TU189508 lncRNA upstream 99453 15566759 ~ 15568750 (-) True G150581
TU189513 lncRNA upstream 111583 15578889 ~ 15580921 (-) True G150586
TU189515 lncRNA upstream 151915 15619221 ~ 15619788 (-) True G150588
TU189562 lncRNA upstream 289547 15756853 ~ 15758160 (-) True G150626
AMCG00000481 mRNA downstream 42276 15415530 ~ 15419570 (-) True AMCG00000481
AMCG00000479 mRNA downstream 50572 15391869 ~ 15411274 (-) True AMCG00000479
AMCG00000480 mRNA downstream 70896 15383657 ~ 15390950 (-) True AMCG00000480
AMCG00000477 mRNA downstream 141631 15311001 ~ 15320215 (-) True AMCG00000477
AMCG00000476 mRNA downstream 152324 15297877 ~ 15309522 (-) True AMCG00000476
AMCG00000469 mRNA upstream 33665 15500971 ~ 15527014 (-) False AMCG00000469
AMCG00000472 mRNA upstream 149657 15616963 ~ 15619029 (-) True AMCG00000472
AMCG00000494 mRNA upstream 785831 16253137 ~ 16266313 (-) True AMCG00000494
AMCG00000493 mRNA upstream 809692 16276998 ~ 16278955 (-) True AMCG00000493
AMCG00000487 mRNA upstream 1182765 16650071 ~ 16659677 (-) True AMCG00000487
TU189419 other downstream 170610 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 239103 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 889414 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1635137 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2919536 12522520 ~ 12542310 (-) True G149847
TU189692 other upstream 1340786 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2539790 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 2944182 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 2945534 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 2946749 18414055 ~ 18414558 (-) True G151089

Expression Profile