RNA id: AMCG00000494


Basic Information

Item Value
RNA id AMCG00000494
length 1062
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00000494
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16253137 ~ 16266313 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATATTAGATTACCAGTCGTGTGAGTCTCTTGAAGAAATACTGAAGGTACTCCAGTTTGAATTCATCAATTTGCAGGAAACCAAATTGGAGCAGAATGGAGCATCTGCTGTGTTGGATATGATCTTATACTATGAGTCGACCACACATCTGAACATATCTTCTAACAAAAGTATCGGAGTCCCAGGTTGGCGAGCTCTCTCTCACTTGATACAAAAGCTAAATAAAGTGGCATCTAGGTCTAAACTTGGGTATAAGCACACTGATGAGGCAGCGCCTGCTGATGTGAGCGTTGTGTTTCAGAGCAGGTGCCTGTGGAGACTGGATGCCTGTAACATGCCTCTCCTGGAGTATCCGGCGCAGACCTTGTCAAAAGCCCTGCTTTCCGGTCGGCTGGCTGTACTGCACCTTGAAAACACCTGCTTAAGTGGCAGGCCGCTCTTTACTCTGGttGGTGCTCTCAAGGTAAACTCAGCCTTACAAGAGCTCTACCTCTCGAACAATGAACTCAACAGCTACCAGGACTCGATGCAGCTGAGTGAACTTTTCAAATATAACCACTGCCTTACATTGCTGGACTTAAGCAACAACCTTATTTCTGATGCAGGTCTGGAAGAAATATGTGACGGGTTAAGACTGCAGCAAACTCGGATTCGAAATCTTATACTGTGGAACAACCAAATAACATACCGAAGTATGATCCATCTGGCTAACATTTTGAATGAAGGCATCCAACGCCTAAAAGAAGCTCTAATAGCAAACCGGTCTCTTCTACATATCGGACTGGCCTATACTAGAATAACTTGTGAAGGTGCTGTAGCCCTGGCAGAGTTCATTGTCGAGAGTCATCAAATTCAACGGCTTGATGTCCGAAAAAACTTAATCAAAACAGGAGGTCTCATGGCCTTCTCCCTGGCATTGAGAATAAACCGATCACTAATCAGGGTGGACTTAgacaaaaaagcaaagaaagaggAGGAGCTGGCGTCTGCTCTGGTTAGAGATGAAGACATCACCATGACAGGACCCCAGGAAAGGATCAGCTGGTATCCTGGGTACCAC

Function

GO: NA

KEGG:

id description
K17576 PPP1R37, LRRC68; protein phosphatase 1 regulatory subunit 37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189602 lncRNA downstream 19948 16232958 ~ 16233189 (-) True G150661
TU189570 lncRNA downstream 381669 15848035 ~ 15871468 (-) True G150634
TU189562 lncRNA downstream 494977 15756853 ~ 15758160 (-) True G150626
TU189515 lncRNA downstream 633349 15619221 ~ 15619788 (-) True G150588
TU189513 lncRNA downstream 672216 15578889 ~ 15580921 (-) True G150586
TU189689 lncRNA upstream 538882 16805195 ~ 16829740 (-) False G150729
TU189691 lncRNA upstream 541948 16808261 ~ 16834326 (-) False G150729
TU189694 lncRNA upstream 556716 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA upstream 568073 16834386 ~ 16836603 (-) True AMCG00000518
TU189814 lncRNA upstream 1287405 17553718 ~ 17574839 (-) False AMCG00000533
AMCG00000472 mRNA downstream 634108 15616963 ~ 15619029 (-) True AMCG00000472
AMCG00000469 mRNA downstream 726123 15500971 ~ 15527014 (-) False AMCG00000469
AMCG00000482 mRNA downstream 774088 15465324 ~ 15479049 (-) True AMCG00000482
AMCG00000481 mRNA downstream 833567 15415530 ~ 15419570 (-) True AMCG00000481
AMCG00000479 mRNA downstream 841863 15391869 ~ 15411274 (-) True AMCG00000479
AMCG00000493 mRNA upstream 10685 16276998 ~ 16278955 (-) True AMCG00000493
AMCG00000487 mRNA upstream 383758 16650071 ~ 16659677 (-) True AMCG00000487
AMCG00000488 mRNA upstream 420792 16687105 ~ 16689646 (-) True AMCG00000488
AMCG00000496 mRNA upstream 455861 16722174 ~ 16736751 (-) True AMCG00000496
AMCG00000497 mRNA upstream 483076 16749389 ~ 16758438 (-) True AMCG00000497
TU189419 other downstream 961901 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 1030394 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 1680705 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 2426428 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 3710827 12522520 ~ 12542310 (-) True G149847
TU189692 other upstream 541779 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 1740783 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 2145175 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 2146527 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 2147742 18414055 ~ 18414558 (-) True G151089

Expression Profile