RNA id: AMCG00000510


Basic Information

Item Value
RNA id AMCG00000510
length 813
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00000510
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17612034 ~ 17640564 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCCCAGTAAGAAGCCGGAAGGCTCAGGAATCAGTGTTTCCAGTGGACTGAGCCAGTATTACCAAGGGAGTTCACTGACAAAGGCGCTCCAGGAGGCCGAGGAGATGGACCTCACACTGCCCACCATCAAACTGGAGAAGGGGGCCATGGAAGACGAGGAGCTGACGAACTTGAACTGGCTGCACGAGAGTAAGAACTTGCTCAACAGCTTCGGGGACTCTGTGCTGCGGAGCGTGAGCCCCGTGCTGGAGATGGATGACGACACCCCGCCCTCGCCCGCGCACTCGGACCTGCCCTACGACGCCAAGCAGAACCCCAACTGCAAGCCCCCCTACTCCTTCAGCTGCCTCATCTTCATGGCCATCGAGGACTCCCCCTCCAAGAGACTGCCAGTAAAGGATATTTACAACTGGATTCTTGAACACTTCCCGTACTTTGCGAACGCCCCCACCGGGTGGAAAAACTCTGTGAGGCATAACCTCTCCCTCAATAAGTGTTTTAAGAAAGTGGACAAGGACCGGAGTCAGGAAAACTCGGCAACCCCTCGTGACCCCCTGGGCGACGCTATGCTGATTCAACGAGACGCAAATGGACAAAGTAGGCCCGGGATTGGGGAGGCTGGCAGCCTTGGGGCAGTCCACCGCCCCGCAGTTACTATTGCTCTTCTCAGAAACCCTGGGAACGTCCCGGCGATCTGGGTGTCCCCACAGGTGAAGGAAGACTGGCCAATCCCTGCTGACGGGGGTCCCGGAGAGGTCAGACGAGATCAAGCCCTGTTTCTGGCTGCTCAGTCGATTTCCAGTCGATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009888 tissue development biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09407 FOXN; forkhead box protein N

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189814 lncRNA downstream 37195 17553718 ~ 17574839 (-) False AMCG00000533
TU189694 lncRNA downstream 771438 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA downstream 775431 16834386 ~ 16836603 (-) True AMCG00000518
TU189691 lncRNA downstream 777708 16808261 ~ 16834326 (-) False G150729
TU189689 lncRNA downstream 782294 16805195 ~ 16829740 (-) False G150729
TU189830 lncRNA upstream 45001 17685565 ~ 17719171 (-) True AMCG00000529
TU189862 lncRNA upstream 124026 17764590 ~ 17765401 (-) True G150852
TU189863 lncRNA upstream 125383 17765947 ~ 17766735 (-) True G150853
TU189880 lncRNA upstream 138664 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA upstream 150498 17791062 ~ 17800956 (-) True G150865
AMCG00000511 mRNA downstream 11544 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000533 mRNA downstream 33651 17553753 ~ 17578383 (-) True AMCG00000533
AMCG00000535 mRNA downstream 59167 17545363 ~ 17552867 (-) True AMCG00000535
AMCG00000532 mRNA downstream 103479 17481663 ~ 17508555 (-) True AMCG00000532
AMCG00000531 mRNA downstream 146332 17462406 ~ 17465702 (-) True AMCG00000531
AMCG00000529 mRNA upstream 70835 17711399 ~ 17718631 (-) False AMCG00000529
AMCG00000528 mRNA upstream 127519 17768083 ~ 17772745 (-) True AMCG00000528
AMCG00000523 mRNA upstream 133236 17773800 ~ 17789068 (-) True AMCG00000523
AMCG00000524 mRNA upstream 180207 17820771 ~ 17865282 (-) True AMCG00000524
AMCG00000522 mRNA upstream 226863 17867427 ~ 17873428 (-) True AMCG00000522
TU189692 other downstream 777708 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2320798 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2389291 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3039602 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3785325 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 366532 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 770924 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 772276 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 773491 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 774958 18415522 ~ 18415841 (-) True G151090

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022611 True 2620 mRNA 0.38 4 NC_007128.7 16565185 ~ 16684877 (+)