RNA id: AMCG00000515


Basic Information

Item Value
RNA id AMCG00000515
length 1278
RNA type mRNA
GC content 0.39
exon number 9
gene id AMCG00000515
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16804719 ~ 16808751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAACAATATTAGAAAGCCATTCATGCACcttcTTCCTTGGAATTGGAAGTTTGTGAAGGAGGTAGAGGATGCTGCAGAGCTTCTACGCAGCACTGGAAGAGAGTgcattgaaaacagaaaaagagcGATGAGAAATAAAGAGGACGTGCCAAAGGATATACTGACCAAAATTCTGCAATGTGCTGTGGATGAAGGAGGATATGATGATGAACACATGGCAAGAAACAACAGCCAGTCAAATTGCTTTTACAATACTGGAACTGGCAAGACACCCAGAGATAACAGAAAAGTTTTGAAAGAGTCTCTGAGAATCTATCCCCCTGCCCCACTCATGACTCGCTTGATCACCAAAGACACAGTCATCGATGGGATTCGCATTCCATGGGGGGTTACTGTATTTTTCAATACTTATGTCATGGGAAGGATGGAAAGGTTTTTCAAAGACCCTCTCAAATTTGATCCAGACAGATTTCACCCAGATGCTCCAAAGCCGTACTTCTGTTACTTCCCCTTTGCTCTGGGCCCCCGCTCATGCCTCGGACAAAACTTTGCACAGATGGAGGCTAAAGTCGTGATGGCAAAACTCTTACAGAGGTTTACATTTCAACTGGTTCCAGGGCAATCATTTGCAATTTTGGACTCAGGAGCTCTAAGGCCTAGAGATGGAGTCGTGTGCACAATCAAGGCTCGAagcaaaatgaacaaataaccCGAGTCATTATTGACTTAAATGATCCATATTGTCTGCCTGCTTCACACAATCAAAAAAGGATATTAGTAAATTACATAACTTCTATGAAACATACCAAAATATTAGTATTTTGCAGACCAATTTCTTTTGAAGATACATAAACCGGGTACATCTGAAATGATTCCGTCTGTGGAGAGAAGtgatcttatttaaaaatataacaaacacTGTAGCACAATTACATGAATACTATGAGGTGTTTGCACATTCATTActtgttcatgtgtgtgttgaAAATGTACTACCAGAAAATGGGGAAGTGAAGTTgtagacataaaacaaatatttctacACTGGTCTTCTGACGCTTTATTGACACCTAGTGGATATCTCCCTGacatgtctttaaaaacaatacagacaTTTGGGTAACCTCATATGTATTCAGTGTGAACTGAAAATCACAACCTGCTCAGAGGTGTGCATACTGATTTGTTCttttgtgatttattgtatAGCTGCTGTgctaaaacattaaatatctaATACATGTTAACATAAATCATCTTTATGGGCTATTGT

Function

GO: NA

KEGG:

id description
K07440 CYP46A1; cholesterol 24-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189602 lncRNA downstream 571530 16232958 ~ 16233189 (-) True G150661
TU189570 lncRNA downstream 933251 15848035 ~ 15871468 (-) True G150634
TU189562 lncRNA downstream 1046559 15756853 ~ 15758160 (-) True G150626
TU189515 lncRNA downstream 1184931 15619221 ~ 15619788 (-) True G150588
TU189513 lncRNA downstream 1223798 15578889 ~ 15580921 (-) True G150586
TU189694 lncRNA upstream 14278 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA upstream 25635 16834386 ~ 16836603 (-) True AMCG00000518
TU189814 lncRNA upstream 744967 17553718 ~ 17574839 (-) False AMCG00000533
TU189830 lncRNA upstream 876814 17685565 ~ 17719171 (-) True AMCG00000529
TU189862 lncRNA upstream 955839 17764590 ~ 17765401 (-) True G150852
AMCG00000519 mRNA downstream 10398 16793575 ~ 16794321 (-) True AMCG00000519
AMCG00000497 mRNA downstream 46281 16749389 ~ 16758438 (-) True AMCG00000497
AMCG00000496 mRNA downstream 67968 16722174 ~ 16736751 (-) True AMCG00000496
AMCG00000488 mRNA downstream 115073 16687105 ~ 16689646 (-) True AMCG00000488
AMCG00000487 mRNA downstream 145042 16650071 ~ 16659677 (-) True AMCG00000487
AMCG00000517 mRNA upstream 20044 16828795 ~ 16833690 (-) True AMCG00000517
AMCG00000518 mRNA upstream 25008 16833759 ~ 16834411 (-) False AMCG00000518
AMCG00000516 mRNA upstream 57058 16865809 ~ 16883174 (-) True AMCG00000516
AMCG00000500 mRNA upstream 76293 16885044 ~ 16903230 (-) True AMCG00000500
AMCG00000499 mRNA upstream 118857 16927608 ~ 16935797 (-) True AMCG00000499
TU189419 other downstream 1513483 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 1581976 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 2232287 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 2978010 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 4262409 12522520 ~ 12542310 (-) True G149847
TU189969 other upstream 1198345 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 1602737 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 1604089 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 1605304 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 1606771 18415522 ~ 18415841 (-) True G151090

Expression Profile