RNA id: AMCG00000523


Basic Information

Item Value
RNA id AMCG00000523
length 3381
RNA type mRNA
GC content 0.58
exon number 14
gene id AMCG00000523
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17773800 ~ 17789068 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCCAGGCTGTTCGCGGTCGAGTGGGAGAAGGTCCAGCGTTTGGATTGGCTAAGCAATCAAAGTTTCCGCACCGAGGATGCGTTAACCTTGCACAGGCGTGCTCTTGAGGAGGTGGAAGAGGGCACAGCGGGTCCTGCAGAGCTAAGGCTCCCAGAGGAAAGTGAGGATGAAGATGTTTCCAAagttaaaaagaagaagaaagagaaaaagaagaagaaacagaagaaaaaacacaagaggCGGAGTAGGGAGCAATCTGAAAACAGCGGCTATGATTCAGACACCATTTATCCCAGCGATCTTATAAAACAGCAGGAGTCTGCTATAGGGCAGCAGCAACCCCTTCCTCAAGGCTCCTTTACCTGGATCGATGACCTTCAGGCCCTTCCTGATTTCCCTTTCTTTATTGATAAGAAAGCAGACCCCGCCAACTGGGAGTACAAGTCCCTCTACAGGGGAGACATCGCAAGGTACAAAAGAAAAGGTAACTCCTCACTTGGCCTGAACCCAAAGACACAGCACATAACCTGGGCCGATTCCACATCCGAGAAGAAAAAGAGTGCAAAAGTGCCAGACCGGTACTTTGCCAAAGCCTGCCGCCTGCTTCTTAGTGCCGAGGGGTTTCCTGTTCTCCCCTGTGCGGAGGGGCCAAACAGGGGCCTCCCGTCCCCTAGCGTGGGCTTCATCCCCATCTCGGAGTGCAGTGCGGAGGCTGTCGGCAGCGACGCGGCCCCGGCCTGGATCAACCCCCTGGGGATTTACGACGCCTCCACCTCCCTGTGGCTACAGGGCAAAGGTCAGCCGGAGCAGGACAAGTCACAAGCAGGGAACCCCCCGGCCCAGACCGCCTTGGCTGCGAAGGTGGAGGAATTCAACAGGAAGCTGCGGGAGAACCCAGGGGACGCCCAGACCTGGATGGAATTTGTCCGTtttcagGACGAACTCACGAACAGACCCAATCCCTTCACTGTCACCGAGAGCGAGTCGGAGAGGGGAAAGAAGTCTCTCAAGGTGACGCTGGAGAAAAAGATCGCCATCTTGGATCGAGCCATCGAGAGCAATGCCGGCAGCGTGGAGCTGAAGCTGGCCAGACTCGAGCTGTGCAAGGAGCTGTGGGAGCCATCCACGCTGCTGAAGGAGTGGAAGAAACTGGTCTTTCTGCATCCGAATAACACAGAGCTGTGGAAGCAATACCTCCTGTTCAGCCAGAGCCAGTTCAGCACCTTCACGGTGTCCAAAGTGAACAGTATTTATGGCAAGTGCCTCACCACTTTGTCTGCTGTTCACGATGGCTGCATGGTGTCCCATCCATCTCTGCCCGGCACCGAGGAAGCCCTGCTCGCGATTTTCCTCCAGCAGTGCCAGTTCCTACGGCAAACGGGCCACTCGGAGAAGGCCGTCTCCCTCTTTCAAGCGATCTTGGACTTCACCTTCTTCAAGCCTGACAGCGTGAAAGATATGACCACCAGGCAGCAGGTGGAGTTCTTCGAGCCCTTCTGGGACTGCGGGGAGCCGCGCGTGGGGGAGAGGGGCGCCCGCGGCTGGATGTCCTGGATGCGTCAGCAGGAGAGAGGCGGCTGGCTCATCCCCAACGAACCAGACGATGACGACGAAGATCTTGAGGACGACACCGAAGTGAAGGATAAGACCTTACCGAAGTGGCAGATCTGGTTGGACGTGGAAGCATCTCGGGAGACCAGGCACTGGCTGCCATGGAGGCCCGACAAATCCAAGGGCCAATCGGAGGAGGACTGCGAAGACCCTGATAGACAGGTCTTGTTCGATGACATCGGCTCCTCCATGATCCGCCTCTTGTCTCCCGAGCTCCGCTTCCAGCTGCTGTGCTCGTTCCTGCAGTTCCTCGACATCCCCGGAGAGCGCAGCTACTCGAGTCCCTTCTGGAGCGTGGCGCTGGACCACCGCTCCATACTGGACGGGGGATCAGAGGCGGCAGAGAGGCCCCTGACCTCCGTCCACCTGAACCACGTCGGGGTCAGCCCGATCGGTCACATGACCACTCTGGACGGGGCCAAGAAATACAGCGGCCTCTGCAAACAGGGCGAGGAATTTGTGCATAATGTCTTTGAGCAGATGATGCCGCTGTTTGCCCCAGAGGAGAAATCACTTCTCTCCCTCTACTGGCTGCAGTACGAGAAGCTGAAGGTTATTAAATGTCTCctgaacaagaacaagaagagGCTGAAGTGGCAGGGGAAGAGGAGTAAGAAACTGGCCAAGAAGCTGCTCAAGGAGCCGGAGAACCGCAACAGCCTGGCCCTGTGGAGGGAGTTCGCCCACACGGAGTGGCTGATCGGAAACACGGACGACTCCAGGAAGGTGTTCGACACCGCCATCGCCACGGGTCTCGGCCAGGGGCTGCAGAGCGCGGACCTCTGTGAGCTGTGCTTGTTGTACGCCCAGCTGGAGGTGGAGGCGATGGACGGAGCTGCTGTTGTGGGTGCCGGCTCTCCAGCTGTCTATATATTAACGAAACTCGCGGAAGGCGGCTCCTATACAGGGTACAGCGGACAGCTACCGCCTGTCAGCATCCTGAAAGCCAGGAAAGTGTATGAAAATGCATTCGTCAGCCTTTTAACTGAGGTCGAGAAGGTGGCGGACGGCTCTGTTTGTGCTGGGTGGCCCATGAGGGTTGTGGGATTAGTCGGTTGTTTCgctttgtttcagtatttaacCGTGGGCATCGAGGCGGCAAACCACGTCTATAGGCAGGCGGTGCAAATGATGTCTGAGGTCTGGACGGAGGAGTCTCCCAACGCCTGGACCGGTCCCTCCGCACTGGAGAAGCTCACCCTGATGCAGGCTGAGCTGCTCAGGTTTCACACGAGGGCCCACGTGTTCCCGCTGGGCCCTCTCCGGGACTCGCTCACCGCGGCGCTGCGCCTGTTCCCCGGCAGCCACAGTCTCTGGAAGCTGTACGTGCAGGTGGAGAACAAGTGCCACAACGCCAGCCGCGCGCGGAGGTTCTTTGCCAGCGTCGCCAAGAGCACCAGGAGCGTCGTGCCCCAGCTGTTCGCCATCCACGCGGAGCAGAGGAGGAAAGAGCTCGTCGATGCGGTGCAGAGGGCTGATTTCGGAGACGTGCACTCGACGATCCCGGAGAACGGGCTGAGCAACCGGATCCGTGTGCTGTTCGAACATGCCGTGGAGAGCGACAACGGGACGCACTGTCCTCTGCTGTGGAGGCTGTACATGCACTTCCTGGTGTCCCAGGGCGATGCAGACCGGAGCAGGGGGATCTTTTACAGAGCCCTGCAGCACATCCCATGGGTGAAGGAGTACATGGATCTGATGACGGAGAAGGAGCTGAGACTCCGAGTACCAATGGAGGAGGTGGACGTGCTGCTGGAGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189863 lncRNA downstream 7065 17765947 ~ 17766735 (-) True G150853
TU189862 lncRNA downstream 8399 17764590 ~ 17765401 (-) True G150852
TU189830 lncRNA downstream 54629 17685565 ~ 17719171 (-) True AMCG00000529
TU189814 lncRNA downstream 198961 17553718 ~ 17574839 (-) False AMCG00000533
TU189693 lncRNA downstream 937197 16834386 ~ 16836603 (-) True AMCG00000518
TU189879 lncRNA upstream 1994 17791062 ~ 17800956 (-) True G150865
TU189900 lncRNA upstream 87514 17876582 ~ 17877124 (-) False AMCG00000521
TU190005 lncRNA upstream 310510 18099578 ~ 18100896 (-) True G150965
TU190137 lncRNA upstream 516017 18305085 ~ 18307705 (-) False AMCG00000559
TU190156 lncRNA upstream 584730 18373798 ~ 18374097 (-) True G151071
AMCG00000528 mRNA downstream 1055 17768083 ~ 17772745 (-) True AMCG00000528
AMCG00000529 mRNA downstream 55169 17711399 ~ 17718631 (-) False AMCG00000529
AMCG00000510 mRNA downstream 133236 17612034 ~ 17640564 (-) True AMCG00000510
AMCG00000511 mRNA downstream 173310 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000533 mRNA downstream 195417 17553753 ~ 17578383 (-) True AMCG00000533
AMCG00000524 mRNA upstream 31703 17820771 ~ 17865282 (-) True AMCG00000524
AMCG00000522 mRNA upstream 78359 17867427 ~ 17873428 (-) True AMCG00000522
AMCG00000521 mRNA upstream 87301 17876369 ~ 17878350 (-) True AMCG00000521
AMCG00000544 mRNA upstream 152489 17941557 ~ 17943170 (-) True AMCG00000544
AMCG00000540 mRNA upstream 178964 17968032 ~ 17973913 (-) True AMCG00000540
TU189692 other downstream 939474 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2482564 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2551057 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3201368 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3947091 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 218028 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 622420 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 623772 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 624987 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 626454 18415522 ~ 18415841 (-) True G151090

Expression Profile