RNA id: AMCG00000524


Basic Information

Item Value
RNA id AMCG00000524
length 4780
RNA type mRNA
GC content 0.52
exon number 20
gene id AMCG00000524
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17820771 ~ 17865282 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATTACTATTACTGCACTGACATCCTGAATCACAATTAGATCCCCCTCCTCCTGCGGTAGGTGGCGCTGTTTCCGCAGCCGCGCTTCCTCCGCGCCGCTGTTGCTGCCCTGGTTTGTTGTGCTCCGTCTCAGCCCGGAGACTCGGTTTTGGGGGAAAGATGACAGCGAGGAAGTCGGGGTCCCGGTTGGAGACGGAGATCGAGCGCTGCCGGTCCGAGGGCCAGTGGGACAAGATCCCGGAGCTGGTGCGGCAGCTGTCGGCCAAGCTCATATCAAACGATGATCTGGGGGAGCTCCTGCTCGGGGAGGCTAAGCTCCAGCAATACCTGAAAGAAAACCCCATCAAACAGGGGGCCAGTCCCCGGGGGGCCAAGCCGCGGCTGGTGGAGGTCAGGAAACACCTGACCGCCGCTCTGGACAGGGGGAACCTCAAGCCGGAGTACATGCAGGAGGCCAGTTTGCTGATGGCCAAGCTGAACTACGTGGAGGGCGATTACGGAGACGCCATCAGCCTCTACGCCAGGGTGGGGCTGGACGAGATGCAGCTGGTGGGGATTCCCGTGTACCGCCTGTCCATGATCGCAGAGGCGTACGCCACGAAAGGTCTGTGCTTAGAGAAAGTGCCCATGGCGTCTCCAGGCACTAATCGGAACGTGGATTCTAACCAAGAGATCATTACCTGTTACGAGAAATCCGGAGACATTGCCCTGCTCACTGGCCTGCACAACCGGAGTCCGAAGCCAGGCCCCGTCTCCCAGGAGCAGGAGCTGGGCTACTTCCTGGAGACGGGCCTTCAAAGGGCCCATGTCATCCACTTCAAAAATGGAAACTTGACGAGGGGTGTGGGGCGGTTCAGGGAGATCTTGAGAGCCGTGGAGACGAGAACGACCCAGAACCTGCGCATGACGATTGCCCGGCAGCTGGCCGAGATCTTGCTACGGGGGATGTGCGAGCAGAGCTACTGGAACCCCTTGGAAGACCCCCCACACCAGTCCCCCCTGGACGACCCCCTGCGCCAGGCCTCCCACACCAAGGACTACGCCCTGCCCAGGAGGCCCAGGGTCTACTCTGGAGAGAACATATTCTGTCCTCAGGAAAACACAGAAGAagctctgctgctgctcctaATTAGCGAGTCAATGGCCAATAGGGATGCAGTCCTAAGCAGAATTCCGGAACACAACAGCGACCGCATCATCAGTTTACAAAGCGCGTCAGTGGTGTACGACCTGCTAACGATAGCACTTGGAAGAAGAGGCCAATATGAGATGCTGTCTGAGTGTCTGGAACGAGCCATGAAGTTTGTGTTTGAAGAGTTTCACCTTTGGTATCAGTTTGCTTTGTCGCTGATGGCTGCTGGGAAGTCGGCCCGTGCCGTCCGTGTGCTGAAGGAGTGTATTCGGCTGAAGCCAGACGACCCCACCATTCCCCTCCTCGCGGTGAAGCTCTGCATCGGCACATTGCATTGGCTGGAGGAAGGCGAGCGCTTTGCAAAGATGGTGGTCGATATGGGAGAGAAGGCGTCCGAGTTCCGGGCCAAAGGCTACCTGGCTATCGGTTTGGTGTACAGCCTGAGGGCCACTGATGCATCATTGCGAGGAATGCAGGAGGAGTATCAGAAGAAAGCGCTTGGTGCTTTTCAGAGAGCCCAGAATTTGTCACCAACTGACCACCTGGCAGCTTTTTACCTGGCTCTACAGCTGGCTGTTTCCCGACAGATCCCGGAGGCCCTGGGCTACGTGCGCCAGGCTCTGCAGCTGCAGGGAGATGACGTCCACTCGCTGCACCTCCTGGCCCTGCTGCTGTCGGCGCAGAAACATTACCACGACGCCCTCAACATCATCGAAATGGCCCTCAGTGAATACCCGGAGAACTTCATCCTCCTGTTTACAAAAGTGAAGCTGGAGACAATCTGCCGAGGCCCGGACGAAGCTCTCCTGACCTGTAAGCACATGCTGCAGATCTGGAAGTCTTGCTACAACCTCACCAACCCCAGTGATTCGGGTCGGGGCAGCAGTCTGTTGGACCGAGCCATCGCAGACAGGAGGCAACTGAACACCATGACACTCCCCGACTTCAGTGACCCAGAAACGGGTTCAGTTCACGCCACTTCCATCGCCGCCTCCCGTGTGGAACAGGCGCTGTCGGAGGTGGCGTCCTCTCTGCAGAGCAGCGCACCTAAGCAAGGCCCTCTGCACCCCTGGATGACGCTGGCGCAGATCTGGCTGCACGCAGCGGAAGTCTACATAGGCATGGGGAAGCCCACGGAAGCCACGGCCTGCACCCAGGAGGCAGCCAACCTCTTCCCCATGTCCCACAATGTGCTCTTCATGAAGGGCCAGGTGGCCGAGCTGCGGGGCAACATGGACGAGGCCAAGCGCTGGTACGAGGAGGCCCTGTCCATCAGCCCCACCCATGTCAAGACCATGCAGAGACTGGGCCTGATTCTGCACCAGCTGGGCCGCTACAGCCTGGCGGAGAAGGTCCTGCGTGACGCAGTGCAGGTTAACTCCACGGCCCACGACGTGTGGAACAGCCTGGGCGAGGTGCTGCAGGCGCAGGGCCACGACGACGCTGCCACTGAGTGCTTCCTCACCGCCCTGGAGCTGGAGGCCAGCAGCCCCATCCTGCCCTTCACCATCATCCCCCGGGCCCTGTGAGTGACCCTgcctacccccccacccccagaccctcccacaccaccaccaccaagaCCACCACCTCCTCTGCCCCCCAGGGTTCTGTCCAGCCCCGAGGAGGTGCTCAAAAGCTTCAGTTGTCATCCCATCCACGGACTGTAAAAACAcgaaaaaatgtaaaaggacTGTAGCTGTATTAAAAAAGAGTGCAATGGAAATGTGAATTGTACCAGCATCGAGAGCTGGAATGAGTGACAGTTTGGTTACATACAGGATAAAACTGTAATCTGCAAATacagatatataaaatactgccCCACTCACTCCAGATGATCAAGTGTTTGACACTGGAGCCAACAATCGTTCGATGTTGCCACCCATTTCATTAGGGTTTCCCGTCCTGTGTTCATCAGTCAGGAGCTGTTCAGATTGGCGTGGAAAGTGCTAGCGGCCCTTCCTCGTGATGTGTACTCGGCTCTTTTGACCGCGCGAGAGATTACGGGGCAGCCTATCGTATCAAGATCTGATTCCACTGCTTGGCAGATCTGATTGTCCAACGATTTGAAGATTAATAATAGTTCTGCGCCATATGCAGATTCTCTCCTGCCAAACGGGAGGGTGGAGGAGAATACCAGCTGTCAGCTTCCACGCCGCCATGCATGTAAACAATGACCCGCAGAGGGAAGGGTGTCCAAGCCCCATTGTCAGCCTAAACCTCCTCCCACTCTTCTCGTTCTTTTGCATTCTGGTTTTGTATCAGATGTATCTCTCCAGGCTTGGGCTGGACTAACGATGAGTGGTTAGTCAGTGAGAGAGTCAGCGCTGTACAGTCAGTGGCTGGTTTTGTGCCAGATTTGTCAAAATTGTGGTGCGAGTGAGATTCTCAGTGGGAGGAAGGAGCAGGAAGGTGAGGACTGACTGCACTCAATAACAGACGGGAGCTGTAGGCCTGCCGACCTTTCACCCTGTGTTCAGGAAGGCGTGCTAATGAGACATGATAGGACCGCATGACAACAAGACAGCGACTGGTAAAAGCACAGCGATGACAGTAAATGGTTAACAGGCTGTGTGTGGGCACGTTGGAgagctatatttattttaatttttgaacTTAGTAGGGgccaaaaacacacagatgagTACGCGACACTGTCATCCTCCCATTGACCACAGATATTATTGACCAGCCTGCTACCAgtgataaaaatgtaaataaaactgtgCACACACTGCCAGGAAAAGCTAAACCCGTATCCCACAGGGCCGTGCATCCACCTGTTCGTATTTCAATCTACGGTGTGATTCCGATTTTTTGTCAATATTAGTTCCCCACCACCCTGCAGTTGAGAATTGCTGTtactttgtttagttttttgtgttacCGGGTTATTTTTATCCAATAGTTTGGGATTTGGTCACAACTGATGTCCTGAGAAACAGTTTGGAAGCATGTTGCTTGTGTTTCTCAGTTGCTCTTTAGTGTTGCTGTACTATTCATTTGTTCGCCCAGCCCAAATGCCAATAGTTTCGTTTAAGAATAGAAAAACTTCGACACGATGCCAtgttttataacaaaacaaaactgttgtcagtcttaaaagaaaataattcgCATTTTAATAACGGTAATGAATGCCAAAAACAGTGCGTGTTACAGCAGTGCGGACAGCTGTATGTGTTGATTCTGTTTAATCAAAGAATATATGTTTTGATCATGTTACCTTTTAGGTTGTGAACTTTACAAatccattattgttatttttgtaaattatattttacagtgggttttatgaaaatgttcagaagctgcaatatttatattttgatgttcAGTAGTTATTTCGTacttgaaagaaaatgtttaagcTTAGGACTGCTGTTTGAGAGAGGCATTATTTAAGAGAGAGATATTTAAACTGGAAATTATATTGTTGACATTCCTGAACTAAAAGATGTATCAATCGAAAAGACATGTAGGATCCTTTCTTGTATTGCATTCGTACTGTCTGTATGCCAAAGCATTCGTTATGTTTAATGTGTTCACCCAACCgagaagagagggaaaaaactCTGTATAGTTAGCTCTGAAATTATCCAACAGACGAATGTAATAtgtcaataaaaatatattggaatAGA

Function

GO: NA

KEGG:

id description
K21843 TTC7; tetratricopeptide repeat protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189880 lncRNA downstream 19815 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA downstream 19815 17791062 ~ 17800956 (-) True G150865
TU189863 lncRNA downstream 54036 17765947 ~ 17766735 (-) True G150853
TU189862 lncRNA downstream 55370 17764590 ~ 17765401 (-) True G150852
TU189830 lncRNA downstream 101600 17685565 ~ 17719171 (-) True AMCG00000529
TU189900 lncRNA upstream 11300 17876582 ~ 17877124 (-) False AMCG00000521
TU190005 lncRNA upstream 234296 18099578 ~ 18100896 (-) True G150965
TU190137 lncRNA upstream 439803 18305085 ~ 18307705 (-) False AMCG00000559
TU190156 lncRNA upstream 508516 18373798 ~ 18374097 (-) True G151071
TU190224 lncRNA upstream 572001 18437283 ~ 18453200 (-) True G151119
AMCG00000523 mRNA downstream 31703 17773800 ~ 17789068 (-) True AMCG00000523
AMCG00000528 mRNA downstream 48026 17768083 ~ 17772745 (-) True AMCG00000528
AMCG00000529 mRNA downstream 102140 17711399 ~ 17718631 (-) False AMCG00000529
AMCG00000510 mRNA downstream 180207 17612034 ~ 17640564 (-) True AMCG00000510
AMCG00000511 mRNA downstream 220281 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000522 mRNA upstream 2145 17867427 ~ 17873428 (-) True AMCG00000522
AMCG00000521 mRNA upstream 11087 17876369 ~ 17878350 (-) True AMCG00000521
AMCG00000544 mRNA upstream 76275 17941557 ~ 17943170 (-) True AMCG00000544
AMCG00000540 mRNA upstream 102750 17968032 ~ 17973913 (-) True AMCG00000540
AMCG00000538 mRNA upstream 111349 17976631 ~ 17998595 (-) True AMCG00000538
TU189692 other downstream 986445 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2529535 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2598028 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3248339 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3994062 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 141814 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 546206 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 547558 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 548773 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 550240 18415522 ~ 18415841 (-) True G151090

Expression Profile