RNA id: AMCG00000528


Basic Information

Item Value
RNA id AMCG00000528
length 2112
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00000528
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17768083 ~ 17772745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGATGAAAACCCTGTGTATGATTTCGGTGTTGATTTTCGAGAGTACGGTGGCCGTGTCTGCGGTGCCAGACGACGAATGCAACGACGAGTTCCCCGCGCGGGAGAACTGCGAGTTCGACGAGGTGTGCGAGGACGCCTTCTGTGTCCACAACGAGTATGTCACCTGTCACATGAACAGGTGTGGGACGTGCGAGGCCGTCTTCCGGGGCTACGACAACCTCACCGTCAACTGCAATCAATTGACACCCAAGTGCCGCCTGATGCACCTGGAGATGCTGAACAAGCGGCGCACCGGGACCATCCTGCCCGGAGGGCGGCTGGACATCGAGTACGACCCGGAGTGCGACGGCTACGGCATGTTCAAGCCCAAGCAGTGCGACGACGACTCGAACCTGTGCTGGTGCGTGGACAGCGCCGGCGTGCGCGTCACTGACAAGACCGGGGACGACCCCAAGTGCGACCGGCTCGTCAGGGTCCAGAAACTGGCTTTTAAACTGGTCAAAGAATACACACTGAAGGCCACCCAGATCCTCGAGATAAATATTCAGGAACTATCCCAGGTGGTGTCGATACGGCTGACGGAGAACGGAACTAAAGATCCGGTGGATGTGGCCACCGTGGCGTACTACATAGAGAGAGACCTGAAGAACAGTAAATTCGGCCTTGAAGTCGACGGCAGGAGCCTGGAGGTCGAGCGGGACTCCATTAAAGTCCTGTTCTTCGACAACGAGCCCCCCCGCATGAACATGAAGACCATCTCGCCAGGGTTCGCTGCCATCATCATCGTCATAGCCCTGGCAATCCTCACAGGAATCGCAGTGTTTGTCGTAGTGAGAAGAAGAGCCGAACAGGAGAAGAAGAGATTCCAGTTCGaagtcattgagGGCCAGGGGCTGGACGACTACCATCTGGCTCAGAGAGACACCATGGCCTACTTTGTCATGTAATATGTTGAGTGTGTACAGAGTgctattttctatttgtattaatgtgacacaattgtaaatgtgttgGTACAAAACAGAATGTGCTTTAAGTTATTTTGTGTCCAACAAAGCTAGAGCCCATTGATTTACTTTTGCTTTATATATGtgacaatgtatttttgtctgtttttaagaaatgtttgcCCACAGCCTTGGGAAACCGCAGGAATATGTTGGATTACGAAGCAGGAACTCCAATTTAGTCACCAGAACACCTAGACAGCCGAGATCACTATTTGTATGGTGGAATTTTtctgcttaaataaaaacagcaaggaCGGAGAAAGTCAAAATGTTGACAGGTATAATACGTTCATATAGCTGCCGTACAGAATTTTTAACTATATGAAGTTAACCTTAAAGGTGTCTTTGATCCAAAATGTATAACATAGAAGCCCAAAAGAAGCAGTGTGTCTTTGTTAGCTGTAACAATGTAGTTTCAGCATTCAAGCCACGAGTTCACTTGTATAGTCTGTGGCTTTAATGCTGCTTATCACTTCTGTCTTTATAACCAGATTTTAACAATAACTTTCTCAATAGTCCATTATTGCCCAGATATCTCTTTATCTGCAGTGCAGCAAGAATGGAAACTCCTCCTTTCAGCAAAAGACATTTCATCTGAGTTAAGAGTAAAAAGTTATTTGAGCTTTGATGCCGAGGTATTCCCCGACACGCCTCTAGGTGGCGCCTCTCAtcttcagaaaataattcagtttagaGACCGTTTTGAACCCACACTTGGAAATACTGTCTTTACAGGTGTGACATATATGATAcaaaacaattttgtttttgcttgatcaagtattaaattgtattttgtttttaaatggaaatttgCTCAACAGTACAGTATAAAGTATGTCTGTGTAGACACCATACCTGGGCACCGGTCGACTCCCTCAGAGGACGTCCAGCAGGAGCTGCATGGAGACTCTCCAGTGAGGCACCTAGTCAGGTTCATATAGATCTCCGAGTCACTGCAACTGAGTTCTTACTAGACACCACGTCGGCAGTATGTCTGTCTTTGTATGAACTCGGATACCCATTCTTTTGCGACACAGAAAcccaattaatttgtaaaaaacgttacaaataaagtaaataaacccATACTACAAA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189863 lncRNA downstream 1348 17765947 ~ 17766735 (-) True G150853
TU189862 lncRNA downstream 2682 17764590 ~ 17765401 (-) True G150852
TU189830 lncRNA downstream 48912 17685565 ~ 17719171 (-) True AMCG00000529
TU189814 lncRNA downstream 193244 17553718 ~ 17574839 (-) False AMCG00000533
TU189694 lncRNA downstream 927487 16823029 ~ 16840596 (-) True G150731
TU189880 lncRNA upstream 6483 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA upstream 18317 17791062 ~ 17800956 (-) True G150865
TU189900 lncRNA upstream 103837 17876582 ~ 17877124 (-) False AMCG00000521
TU190005 lncRNA upstream 326833 18099578 ~ 18100896 (-) True G150965
TU190137 lncRNA upstream 532340 18305085 ~ 18307705 (-) False AMCG00000559
AMCG00000529 mRNA downstream 49452 17711399 ~ 17718631 (-) False AMCG00000529
AMCG00000510 mRNA downstream 127519 17612034 ~ 17640564 (-) True AMCG00000510
AMCG00000511 mRNA downstream 167593 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000533 mRNA downstream 189700 17553753 ~ 17578383 (-) True AMCG00000533
AMCG00000535 mRNA downstream 215216 17545363 ~ 17552867 (-) True AMCG00000535
AMCG00000523 mRNA upstream 1055 17773800 ~ 17789068 (-) True AMCG00000523
AMCG00000524 mRNA upstream 48026 17820771 ~ 17865282 (-) True AMCG00000524
AMCG00000522 mRNA upstream 94682 17867427 ~ 17873428 (-) True AMCG00000522
AMCG00000521 mRNA upstream 103624 17876369 ~ 17878350 (-) True AMCG00000521
AMCG00000544 mRNA upstream 168812 17941557 ~ 17943170 (-) True AMCG00000544
TU189692 other downstream 933757 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2476847 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2545340 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3195651 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3941374 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 234351 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 638743 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 640095 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 641310 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 642777 18415522 ~ 18415841 (-) True G151090

Expression Profile