RNA id: AMCG00000529



Basic Information


Item Value
RNA id AMCG00000529
length 273
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00000529
representative False

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17685565 ~ 17719171 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTATTTGGATACAAGCCGTccaagTCAGAGACAAACCTGCTAATGGATCCAGTTctgcaaacacattttccagGCGTCCCCTTGGATCACTTTATACGTCTCATGGGGAGGAAATTGTCAGCGCAGGATCCCTACGAAAAGGCGAGACAGATCTTCATGGCGTTTGATGTGCACTgtcgTGGCTTCTTGACGGTAGAAGACTTCAAAAAGGCCTTCGCTTGCGTTGCACCTCACTTACCTGAGCGAACCGTGCAGGAAGTATTTCGGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU189814 lncRNA downstream 136560 17553718 ~ 17574839 (-) False AMCG00000533
TU189694 lncRNA downstream 870803 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA downstream 874796 16834386 ~ 16836603 (-) True AMCG00000518
TU189691 lncRNA downstream 877073 16808261 ~ 16834326 (-) False G150729
TU189689 lncRNA downstream 881659 16805195 ~ 16829740 (-) False G150729
TU189862 lncRNA upstream 45959 17764590 ~ 17765401 (-) True G150852
TU189863 lncRNA upstream 47316 17765947 ~ 17766735 (-) True G150853
TU189880 lncRNA upstream 60597 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA upstream 72431 17791062 ~ 17800956 (-) True G150865
TU189900 lncRNA upstream 157951 17876582 ~ 17877124 (-) False AMCG00000521
AMCG00000510 mRNA downstream 70835 17612034 ~ 17640564 (-) True AMCG00000510
AMCG00000511 mRNA downstream 110909 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000533 mRNA downstream 133016 17553753 ~ 17578383 (-) True AMCG00000533
AMCG00000535 mRNA downstream 158532 17545363 ~ 17552867 (-) True AMCG00000535
AMCG00000532 mRNA downstream 202844 17481663 ~ 17508555 (-) True AMCG00000532
AMCG00000528 mRNA upstream 49452 17768083 ~ 17772745 (-) True AMCG00000528
AMCG00000523 mRNA upstream 55169 17773800 ~ 17789068 (-) True AMCG00000523
AMCG00000524 mRNA upstream 102140 17820771 ~ 17865282 (-) True AMCG00000524
AMCG00000522 mRNA upstream 148796 17867427 ~ 17873428 (-) True AMCG00000522
AMCG00000521 mRNA upstream 157738 17876369 ~ 17878350 (-) True AMCG00000521
TU189692 other downstream 877073 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2420163 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2488656 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3138967 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3884690 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 288465 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 692857 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 694209 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 695424 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 696891 18415522 ~ 18415841 (-) True G151090

Expression Profile