RNA id: AMCG00000531


Basic Information

Item Value
RNA id AMCG00000531
length 2889
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00000531
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17462406 ~ 17465702 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaattattttaatcagtatgGGTTTTAAGTGAAGAATATAATTGTACAAAGAACCAGCTATTTtattgcacaatttaaaaagtcaaatctatgCAGATTGTttcttcaattaagtaatcaatgGCTCAGCAGGGTAGGGTctcctgcaggaccagggctgggaccCCTGACAAGATATTTATACAGGAATTAACACAATTGATACTAGAGGACAATTACTATCCAGTTATTGACTTTATTAACATGTTCATATTAACAGCTTGATTAAATGCAGAGTTTCTCTATTGGATGATTTGCTCTTGGTAAACCAGTAGCAGAGGATGGATGCTAATTAGGCTAAGCTGTTTTAATGTTCTCTGTGAACAGGATGAGAAGGTAGATGCCACATCTCATAGTGTCCGCCTGGCAACTCTGTCATCTTCTGTACGAGGACAAAACAGCTTCCTGTCGAGCTCCCTCCTCACCGAGAGCAGCTCACCTCACAAAAGACTGGCCTCTCCAGATTTTGACACCAGCAAGGAACAAGATCCGAGGTTCCTCATTAATGGTGTGGAAAGATCGGACACATAGTTAGTACTCAAAACAATTCTGCATCCACAGTTCAGAGCCACCAGTATATAGGTAGTTACTGTTCACATTACCTTCAATCTCCACTACAATGTCATGCATCATCCGGCCTCACAACACAGGCTTCAGCCCAGCAGACTCCCTGACGTGAATAAAGCACACTCCTCTCTACACTGCGCTAGTCTCTATACATGGGTTAAGTGGTTATCTTCAGAAGTGCACATacttacttttaaattaattgataatCGTTAGTTGCTTGTGCTAAATTGTTGATGGAATGGATGGAGTTTTGATCTCTCTGGATTTAAAATTAGTGGGGTTTAGTcagaaaacaattaagtgaTTATTTCAATTCCTTAGAAATGGGTGACAAGCCAGCACCACACtatgggctggtttcacagacagaTTAACATTGGGGCTTGGCCTACCCCATGTTATTTTAGGTGGGGTACAAGATCAGCACTAATCGAGGTCTGCAAAACCAGCTCCGTAAGTCCCAAATTAAGTTTGTTAAAGCATCCATTAACCATTAGACAGTGCAGGTTAAtatttgcatgtaaatgtaaaaataatatacattctAGAATGCCAGCTCATTTGACTTCTAAAGGTGAGGCAACACCCTGAGGGCTTGCCAGGCTGCTGGGCTCTTTTAACAGGCCTGGCCTCAGGGAGTAGAGTGCAGTCAGGTCTATTTTTACAGTGCTGGAGCGAAGGAAGACAGAGAACCAAACCCTACCTCCTCGTTGAGCTGAACGACGCAGTGGCAACAGACAAAACCACAAACAGGGCCAAATCGCAAATCCAAAAGAACAGTCAAAGTCTGTAAGACAAGAGTTCTTTACCTGCTTCATGCGTTCACACCCTGTCTGTTCCTGCCTTCGCCTGGCAGTCAGGTGCTTTCAGAGTATGATTCGTCCTTGCAGGGTTTCTGGGAGGTGTAGTGCTACACTCAGCACTGTGCTGCAATACAAAGAGACTGTGAGGTTTTAGTATGAAGTTCAAGTGTTTTTAAACTACTGAACACAAGTGCCTTTTTCCTACCTGCacagattacatatttttatacttGATATATATTGTGCCTGATATAGAGGAATTgtattgtgcatgttttttttatttcctgtatgAACTCATAGAAGGTCATAGTTTGTTCTAAATTTGAAGACAAATGTTTCAACATCATAcagatgttttatgttttatgtctaCTGGTGCTATAGTCCTGTAAAAGGGAGGATAGGTAATGAATTGCAATTTTATCCAGATATTAAAGCCAATAAGTTACATAGAAGCTCACCATGCGTGCACTTTATAAACATGACTTCAATATTTTGCCTACATAATTACACCTGATACAATAACCAGTAAATAAAACCACTGCATAGGATGAGACgttcactgtgaaatttggaAATTGTACAGTAAAGCCCATACATTTGCATTACGCAAACTAAAGGtccatacatttacatttcattatatttcaaCAGGGCCAAAACATCGCTCCCTTTTcgagttgtttttgttttcaaaacacacGTTCAGACTGGTCAGATGACTAAGAAGGACCCACATTTTTATGTAACAAGGTTTTTCACTGGAGCGAACCTATCCCAAATTAGGCATTTCCTCTCAAGACTCATGAGCATAATGGGCCTTTTCTAGCTTACGGGGAGAAAAAAGGCTTTTATCTGGTGctaatgcataatacatttttcaatactaAGGGTTTGTATAGGAAGGAATTCTCTAACAATTCTTATTCTTATCTTAAACTAACCAAGCTCTGTTTGGTCATCGCAAGGACTTCTTTGAGGAAGACTGAAgcacaaaactatttttttttaaataaaaaatgtgagaaattaagataaaattaaatgtctatCACATTAACTTAAATTGGCGTGCAGAGTGTGGATAAATGTTAAAACTCACCACTGGTTTCATGACATCTAAATGATAAACATGTacaataatattacagtttatatcgttattattcttattaattataACTGTGTTTCATGTGGGAAAGAATGtgtgaatacaaatgaatgcatgTGCCAAGAGACTGACTGgattgagtttattttttaatgttattcactattgtgtaaattgtactGGAGGAAGCCTGATCTAAACTTTCTACTGAATAATTCATGTAATGAATTCTGACTTTTATTTCTCCCCAACAAATGTTAAATCCAcagttatgattttttttatatgcttCAATCATGTACAGCatttccaaatgcattttttttttttaattattcatccaAAACTTGTATAAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189694 lncRNA downstream 621810 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA downstream 625803 16834386 ~ 16836603 (-) True AMCG00000518
TU189691 lncRNA downstream 628080 16808261 ~ 16834326 (-) False G150729
TU189689 lncRNA downstream 632666 16805195 ~ 16829740 (-) False G150729
TU189602 lncRNA downstream 1229217 16232958 ~ 16233189 (-) True G150661
TU189814 lncRNA upstream 88016 17553718 ~ 17574839 (-) False AMCG00000533
TU189830 lncRNA upstream 219863 17685565 ~ 17719171 (-) True AMCG00000529
TU189862 lncRNA upstream 298888 17764590 ~ 17765401 (-) True G150852
TU189863 lncRNA upstream 300245 17765947 ~ 17766735 (-) True G150853
TU189880 lncRNA upstream 313526 17779228 ~ 17800956 (-) False G150865
AMCG00000534 mRNA downstream 2608 17456989 ~ 17459798 (-) True AMCG00000534
AMCG00000501 mRNA downstream 519838 16937777 ~ 16942568 (-) True AMCG00000501
AMCG00000499 mRNA downstream 526609 16927608 ~ 16935797 (-) True AMCG00000499
AMCG00000500 mRNA downstream 559176 16885044 ~ 16903230 (-) True AMCG00000500
AMCG00000516 mRNA downstream 579232 16865809 ~ 16883174 (-) True AMCG00000516
AMCG00000532 mRNA upstream 15961 17481663 ~ 17508555 (-) True AMCG00000532
AMCG00000535 mRNA upstream 79661 17545363 ~ 17552867 (-) True AMCG00000535
AMCG00000533 mRNA upstream 88051 17553753 ~ 17578383 (-) True AMCG00000533
AMCG00000511 mRNA upstream 131758 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000510 mRNA upstream 146332 17612034 ~ 17640564 (-) True AMCG00000510
TU189692 other downstream 628080 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2171170 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2239663 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 2889974 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3635697 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 541394 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 945786 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 947138 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 948353 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 949820 18415522 ~ 18415841 (-) True G151090

Expression Profile