RNA id: AMCG00000532


Basic Information

Item Value
RNA id AMCG00000532
length 2783
RNA type mRNA
GC content 0.54
exon number 16
gene id AMCG00000532
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17481663 ~ 17508555 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatacCTCTTTAGAAAAGCTATCCCAGCCATGGCCGAAACATCCAGTGATTCAGACACGTACTCGAGGAATCGTGTGAACCGCCCGGGCCGCGTCAGAGCAACACATCTGACCAGCCCGAGAAGAAGCAGGGTCAATGGATCTGTGAACATTTCAGAGAAGATCGATACTTTGGCCAACACTTTACAGGACACCAGTCGAAATCTGCATACTGTTGATCGGATGTTGGGCCAGTACAGAGAGCACACAGAGGACCAGGCCGAAGCAATGGGCATGctCAGAGAGAACCTAGAGCAATCTATTCATCAGTTAAGGAGTCAGAGACTTCGAAGGAACTCTGGAGCCAGGAGTGCATCGCTTTCCACTTTACACACGAGTGACTTAGATGGAGGATCGGCCTCTGAAAATCATCATTACCGCCCCACCTCACCACTACGGGATTATGGGCCTTTCGAAGGCACTggcagaaggaggtcaaggtcAGCCACCGTACGGTTTATGGATGAAAGTGAACCAGTTGAGCACATCCACGAGATGCACCAGTCCCTCCGAGACCTCCGCAGTGAGCAGCTACGCTTAGGAGATGATGTGGAGAGAGAAATTGTCAGGCGAAACAGGGTTGATATTGAAACCAAAAAGACTTTGGAAAATTTATCAGACAGTCTAAGAACATCACAGAGAGAAGAAACGGCCTCCGAGCGAGTGGAGAGACGTCTGCAGGAGATAGAAAAGGAAATGCGGTCGGAGCGACGGCAAGTGGAGAAGCGTCCGGAGCAGCGAGGACACATGTCCCTGCAGTTGCAGGAGGCTTTGAAGAAAAGAGAGGCGAAAGCCGGTGAAAGCGAGGATGTCATGAAGAGCAAGCTGCTGAGATCTGAACTGGAGAAGAGCAAGATCAATGACCTTCGAGCGCAGCTGCTGAAGACCGAGCACGACTCCCTGGACATGCAGCGGCAGATCTCAGAGATTTCTCTAACGCGGCGCAGTCGTCAGGACGAAGAGGAACAGGAGCGGAGTTTGAGGACAGCAAGTCAACGGTCAGAGCGCGAgaagcaggagctggagaagcAAGTCCAGGAGCTGAGGCTGCAGCTCGGGCGCAGCGCGGTGATGTCTGAACTGGACGAGCTGAAGAGGGCCATCGAGcgcaaagagagggagaaaacgCAGCTCAACGCGCACATCGAGGCGCTGTCCTCAGACCTGGACAAGCGGGAGCAGCAGCAGTTGAGGATGCTGGAGCAGCTGAAGGAGATCCAGAGCCACTCCGAGCAGAGCGAGGTGGACAGCGGGCGCATGGCGCTGCGTGTGGAGGAGCTGGCCGGCCAGCTAAAGGAGTCCAGGAGGGAGGCGGATAAATACCTGGGCATGGTGAAGGAGGCCGAGGCGCTGAGGGAAGAGAGcgagaggaggaaggaggacCTGAGGGCCAAAGCCCAGGAGTCCATCAAGCAGTGGAGGCTGAAGTGTAAGAAACTGGAGCGGGACCTGGAGAAGCAGACCGGGGTGGCGGAGCTCATGACGGAGAAGAGCAGCCAGGTgctgaaagaaaaggaaagcctCCAAGGGCAATTCCAGATAGTCAGCCATCAGTTGGATAACCTCCGCAAAGAGCTGAGCGATGTCCTGTCAAAGCTGGCACACAAGGAGGAGGAGGTCCACTGCAAAGACGTGGAGCTCAACGAGACCAGGGCGCGGCAAATGAGCCTGGAGCACGAGATCCGGGAGGCAAGGGACGTGGCCTGTAAGCTGGAGAGTGAAGTGGAGAAGCAGAACCTGTTGCAGGTGCAGCTGAAGGACGAGAACCAACGTCTGGAGAGCGAAGTTGACGCCCTGAGCAGAAAGAGGGAAAAGGACAAGGAGACGGTCCTGGAAATGCAAGGGGCCATCAAAGACCTGAGCGCCATCCGAGCCAATTTGACCGACAGGCTGGCTGAGGAGGAACGGGCCAGGAAGGAGCTGAAGAGACATGTGAGCGAGCTGCAGCACCAGCAGGACTCTGCTCAACAGGAGCTTGCCTCTGTGGGCCAACAGCTGAAGCTTGAGAGGGACCTGCACCAGAGGGAGCTGGTGGGACTGAGAGCGGAGCTGCAAAACGCAAAAGTGAAGCACGAAAAAAACTTCCAGGAGGCACTGCAACTGTTCAGACAAGAGAGAGACGAGCTGGAGATCCACCTGAGAGATTTGAAGGCAGAAGCAACAGTGGACAAAAACTTGGTTAAAGCTCACCGCCGGCAGCTAGAGAAGATGAAGATTGAATGTGACAAACTGACAGAGGAACTAacccagagagaggaggaaaacacGAAGCTGAGGAGGAAGTACCAGCTGCTGAAGCAGGAGCTGGAAGAGAAGGGGAAATTGATCACCAGCGGAGACGACCGCGTTAGAAGGATGGATGAAGCGATTCTGGAGCTCAGAGAACAAATTGACTGTTTGGAGACGGAACAGGAATCCATACTTCGCACCATAGGAACCGAAATTGACTCTGCGTGTGAAGTTTTCGCTCGGGACTCGGATGAGAAATTCAAAGTAATATCCCTAACACCTGGCCTCCAGAAGGACCCACATCGCTGGCTGGCAGAGATGAAGACAAAGCTGCAGTGGCTGTGTGAagaggtgagggagagagagggtcaaCAAAAGAAGCTGAGACGTCATCTGCAGCAAGGCCGAGAGCAGCTCAAGGGCCTCAAACAGAATAAGGAATCTGAGCAGCAACTTCTGATTGAGCAGATCTCAAAGCAGGAGCAGCTGCTCGAGGAGATCCACAAAGAAAAGAGA

Function

GO: NA

KEGG:

id description
K16460 CEP128; centrosomal protein CEP128

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189694 lncRNA downstream 641067 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA downstream 645060 16834386 ~ 16836603 (-) True AMCG00000518
TU189691 lncRNA downstream 647337 16808261 ~ 16834326 (-) False G150729
TU189689 lncRNA downstream 651923 16805195 ~ 16829740 (-) False G150729
TU189602 lncRNA downstream 1248474 16232958 ~ 16233189 (-) True G150661
TU189814 lncRNA upstream 45163 17553718 ~ 17574839 (-) False AMCG00000533
TU189830 lncRNA upstream 177010 17685565 ~ 17719171 (-) True AMCG00000529
TU189862 lncRNA upstream 256035 17764590 ~ 17765401 (-) True G150852
TU189863 lncRNA upstream 257392 17765947 ~ 17766735 (-) True G150853
TU189880 lncRNA upstream 270673 17779228 ~ 17800956 (-) False G150865
AMCG00000531 mRNA downstream 15961 17462406 ~ 17465702 (-) True AMCG00000531
AMCG00000534 mRNA downstream 21865 17456989 ~ 17459798 (-) True AMCG00000534
AMCG00000501 mRNA downstream 539095 16937777 ~ 16942568 (-) True AMCG00000501
AMCG00000499 mRNA downstream 545866 16927608 ~ 16935797 (-) True AMCG00000499
AMCG00000500 mRNA downstream 578433 16885044 ~ 16903230 (-) True AMCG00000500
AMCG00000535 mRNA upstream 36808 17545363 ~ 17552867 (-) True AMCG00000535
AMCG00000533 mRNA upstream 45198 17553753 ~ 17578383 (-) True AMCG00000533
AMCG00000511 mRNA upstream 88905 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000510 mRNA upstream 103479 17612034 ~ 17640564 (-) True AMCG00000510
AMCG00000529 mRNA upstream 202844 17711399 ~ 17718631 (-) False AMCG00000529
TU189692 other downstream 647337 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2190427 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2258920 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 2909231 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3654954 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 498541 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 902933 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 904285 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 905500 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 906967 18415522 ~ 18415841 (-) True G151090

Expression Profile