RNA id: AMCG00000533


Basic Information

Item Value
RNA id AMCG00000533
length 6247
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00000533
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17553718 ~ 17578383 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATAATATGCTTCAAACCAAATGAAGCTgcacagaagaagaagaaaaaaacagctcagGGGAGGGTGTGTTCACGAAAACATAATGTAGAAACTTTTAAACACCCAGTAAAAGCCAAATTTGAAGCCTGGCTTACATCAGAGTAGGAGTGCCACTACATGGACACCGAAGGAAGTGAATCCTAAACCGGGACGCCTCCTGCAGCGCAGCATTGACTTTGGAAAGCAATGATTCAAGTTAAGGCACAATGACAGCCGTGGGTACAACGGGACAGGCCACACAGCGGTCTGACTGGGTCTCCTTCGCTGACGAGCCTCCTCTTCATTCCCTGCTAACCAAGAAAGATGGTGACCTCGGCCTGCATCAGCGTGCCCTGGACGCCTCCTTCCCGTCGCCTGTTCCCGGGACAGTAATGCCAGCCCCCGAGCCTCCTACCCCTCAGAGCACCTGGGTCCAGTTTGATGACCAGCCGTGGACCAGCGCACTTCCCGTCCAGCCACAGGTAACAGGCTCCTCGGGAGGAGGCGTGCCGCGCAATCGCTGCTCCCAGGCCAGTTTTTGGAGCCACGCCCCTCCCTCGGACGGCAGCTGGACCTCGCACTCCGAGGACCCCAGCTCTCTGAGCGTGGCGGCGTCCTTCCCGGACCTGCAGTCTCTCCACACCGAGGACCAGCACAGCCAGGAGGCGTCCCGGGCCCACTCCCCAAACTCTTCTGTCTTCCAAGAAGATGAGGATATAGACATGGACGCTGGAAGCTGGCACTCAACCACTAAACAAATGAATGGTCAAGCGGAAAAATCGAAGTCCCCCCGCTTCGCCAGCTGGGTCACCTTCGATGATGATGAAGATTCCAGCTTGCATTTCCCTGGGAAACCATTGCCTTTCAGTGTGCCAAACCCGGATCCCAACAGGAATTTTATCATGCCTGAAGGACAAGGCCAGGAGACAGAGGTCACAAGAAACCTTTTGGATTTGACACCAGAAAAGACCAATCCTGCCTTTACCCTGGACAGCCCTCTGTTGAAAAGCAGTACTCCAAGCGGCAAGAAAAACCCATTCTTGGATGATGAGCTGTTGGATATTCAACCCTCCCCCATCAACCCATTCAGTGCCTATTTTGATAAGCAGGACCACCAGTTCGATCAGACACCCCAGAGCAATGGGTCATGTTCAAAAAGCccccatttattttcattcagctCTCCATTTTTCAATGACAGCGTCGATGCAAAAAGGGACTCCATCTTACTGTTCCACCCTGTGTTTGACACCAGCAGTAGTGAGGATAAGATTCAAAATGCTCCTCAGGATGAAACTCTGGGACAGTTTAAGCAGTTACACATTGCTGACCCGGATCAACTGGGTAGTCCCACCTCTCCTGAGGACCTTGTTGATCATGAGGAATTAGACGATCCCCCTTTTCATCCTTCCCACATGGAAGCCAAAGATGGCTGGCCACTGATGTTGAGGAtacctgaaaagaaaaacataatgtcTTCTCGACACTGGGGGCCCATCTTTGTGAAGGTTACGGACACTGGTTGCTTACAGCTCTTCTATGAGAAGGGGCTGGAGAAACCTTTTAAGGAATTTCAGTTGGATGGCAGTCACGAACTCTCGGGACCCAAGCTGCAGAATTACGATGAAAACGGGAGAGTTCACACGATAAGCATAGACCACGTAACCTacaaagaaaagaggaaaatcCAGCCAAAGGTGGCGGTAGTTCACACTCCCGTAAAGGAGCAGCTGGTGAAGCTCGGCACCACGAGTTACGAGGATTTCCTCAGCTTTGTCTGGGTGGTTCAAGATAAGCTGATGCACCTGCCCGTGGAAAGTGACACATTCTCCTACACTACAGCTTATGCTGAGGAAGAAATATTAGTTGAAGTGAGGGACGAGTTTCACGGAGTCGTCTCTAAGGGTGACAACAGGATAATGCAGCAATTGGTGGTGACCCATGTCAACATCTTGGGCTTTGTTTCCAGTTCACCGTTATGCAGGATCGGTTTCAATGATATCCAGGTCAAAGGCAATGAAATCGTGTCCAGGCATGACATCATCCCTAACAGCACCACGAGGTGGATTAAGCTCAGAGACTGCAAGTTCCACAAGTGTGTGGATGAGACGGAATTTGCCAATTCGAGGGTGATCGCCTTTACCCCTCCTGCCGGGCGCAAGGTTGAGCTGATGCATTTCAGGACGGCCTTTGCCGAGAAAACCCTCCCATTCACGCTGAAGACCATCACCACCATCAAGGGCGCGGAGGTGGAGCTGCAGTCTTGGCTGGTGATGTCATCAGGGTTTTCATCCAATCGCGACCCCTTGACTCTGATTCCGTGTGAGAATGTCATGATCCGCTACCCGGTCCCCTTGACGTGGGTGAAAAACTTTCGCCGGGACAGTGTCATGGGGGAGAAGTCGCTGAAAGCAAGAATCAATAAAGGGGCCAGTTTTGGTTCCACCAGTGTTTCAGGATCCGAACCCGTGATGAGAGTCACTTTGGGGACTGCCAAATACGAACATGCCTTCAAGGCTGTGGTGTGGAGGATAAACAGACTCCCAGACAAGAATTCAGCGTCGGGCCACCCTCACACCTTCTTCTGCCACCTGGAGCTGGGCTCCGACCGCGAGGTGCCCCCCACGTTCTCCCGGCACTTGGACATCGAGTTCGACATGCCGGCCGCCTCCGCTTCCAAAGCCACCGTGCGCTCCCTCTCGGTGGAGGACAAAGCGGACATCAAGAAATGGGTCACCTACAAGTCACACTACACTTACCAGGTCGAAATGGATCAGAAACAAGATCCGGTTCAGCACACGAACGGCCAACAGACGGAGGAACCGAACGAGTGTCCGCAGCAGTGAAAACCGGAGAACATATTTATTCACAGGGAGGAGAAACTGCACTTTGGGGAGTTTAGTTAACACTGTTTCATTACTGTACTCAGCTGGAGTTTGGAAGATTAGAAATGTGCTTTATATgatccttttttaaaaatagacaatgACCAGAGTAACCTTAATGGCCACtttttttgaaagaaatgtagTAACTTATTAGCTGTACAATTCGATTGCCTAATTTAACAAAATTCAACACAGTGAGTGTCAAATTAAGCTTGTTGAAGGATGCCATAGGGTGACGCTCAGACGAACACTTGGGAGGTGTGCATTGTATGTAGTGAAAAGTAATGGATGAACTActtaagtttatatatatatatatatatatatatatatatatatatatatattaagcagTTGAAGACATGCACAGAAGACATTTACAGAAGTGCTTTctacagcaaattaaatggttttgtttggtCTGATTCTGTATGACTCAAGTGAATCACATAGACCTCGACTTTAAAGCGTAGATTCAGGGTAAGTTTAACAAATCATGAACTTGAATAGCAGGTTGTCTCATTCTGAACAACAAGAGAGACACAAAAGGTGCCTTCAGAACCATTCTAATACTTTAACTAGCTTTACAGACACAAGCAGAGCCTTCTGACTATAAGATGCCATTAACTCTAGCTTTTATCTGAGCTCTCTGTGAAAGACAACGTGTGGAAATGACACACTTAGCAGGTGTAGGATAAGGGGAAAGGAATatatgttttgattgtttatctGTGCTAATTTAATATAATCACATATTCTTATTCATTCTGATAACGTGCTTCTGTTATAAACATGCATGACACCATTTACAGTCCTagaaacattttcttgtgtgtttttcaatataGTTTCTCAATCATCATGTACAATACTTGGAATCAGTctctttttcacagttttttaaacatttctcttTCAGTATCCAATCAGACATTACTCATGTTGTGAAATGACTTGTTTTTATAGCTTATATGTCAGGACTTAAATTATAGACTAGACTATAGACTGAATGTTTAATGTCAGATTGGGGACAAATCACAAATTGTTCAagcaaaaaaaccaaaacatatttaagtGCTTAGTTATTTAACAGTTACATGTTATTACTGCAAAACTACCTTTTTGTCTTATTGTTTACATGAATCCGAAATTTAAGTTAACATTCCCTTCATTACCTCGATCACATAGAACTTAGTTTATGGgagattttaataaattatgaatatgtCATACTACAGGAGGTTACATCACGAGGGAATTTTCTAATATTGtgcaaaaattaaaacataggCTGGTTTAAAAAGACGAAAAGGTGTGAGTacagaataacagaataaaaatactgtaaGAATATCTGTTAGTAtagatttcctttttgtttctgcaCTACCTGTTGATTTCAGATGTCAGTTCTTCAGTACTGCACTGCAAGTCAGAAAATCGTATAATAACATCtgaaaagggaagaaaacaatCTGGCAGTTTCTGTGCAGTGTTACTCTTCTCACCTACTGAGAGATGTGTGTATAGAGGGAGAACAGAAAGTTATCTGCTGAgtttcagagaagaaaacaaatgtggagGTAAAAAGAAGACACCAAGAATAGccaatgttttccattttgaggGACTGATTTTAATGTAGCAAGCAACAGACAGTGAGCCAGTTTCACTCTGCTAGATTGGAGATGTTTATGTGGCTTATAAATGTCTCATAACATTCATAACGTGGTGCCTTCTTGATAAACAGAATTACGAGAGCAACTGTATTAGGTGTGTTTAAGTTTCTCagattgaaattgttttaaaatgttttaatccaagTATTTCACAGTGCTCTTTAAGGCAATTTTTTATGCTTCAACTTTAATTTAGATAAAATCAACGTATTAGGATTTTAATCCtctcaattatttttatagGTGCTTTGGGCATATCCTATGCTTAGTAAACTACTAACAGGGCCAGTGTgcataaaaagagaaaatgtacaaCACTCTTAGAAAACTGTAAGTAAAAATGCCAAGGATACTATATCTGagctattattttaaatgtaggtCTTCAGAACACATCATTAAACCAAGATTGTAGAACTCATTGcactataaatgttttattcttgtcTTTGCTTTTaagataaacaaattaatagatCAGTACAAGACTTTGACCTTTTATCAAAGTGATTTGAATTGTAGGAATCATATCTTGACTACATCCAAGAAATCCAGAAATACGTTCAAGAAGCTTAAcgattttatataaaatagcTAACCAATGTAAGAATTTAGAATAAGTCTGACGTAAGCTGATTCTACACCACAGCAAAGGTACTTTACAATTCATCTATATATCTAGGTCTTATCAAGTTTACAAATAGGTGTAGATATCATCTTGCCATTTTCTCAATCCCTTCACTGAAAGCTTTAAGTGGATCGCTAGTGTACTGTTTCCAAAGGCTAAAATGCTTTGCATAGGAAAGCATAGGCCAAGTGGTTCCCAACAGAACTTCAGCTATTTTTGATCTACTCAGAAAGCTCAAGTGAATTGGAAAAGGAGCGTTAGATAGGCACTGAGTTGTTTCCccattctgtgtatttttagcatttgacttttaaaaacacaatagagACAAATCATTTAATAGGTATACAGCAAATGAGTGTAAAGTACAAGTATCTTGCAAGACTCCAGGTCCTGACAGTGACAGATTTTAGCTTTTGTGCATTAATACGAAACCATGAAAAGGGACTTCCCTGTCCATGCTGTAAAATGATTTGTTGGCCTTAAATGAAGGGATCAGTACTGTAATAGTTTAAAAAGACTCAtgcatttgactgtttttatCCTTTAAAACTATACAATATGCTTTATATGTCAGTCTCTGCAGACCACACCTATTTTAATCACCTGCCAAAAGAACTGCCactgtttttgtattcaaaacACTAGTTTTAGAGGCTCActcaaacagtattttttttttaaatggcggTAGGGGTTAAAATGTACACTAAAAGGCCATTTACTATTTTGTACTGGTGCAAGTAGGTTGGGATGCCATGCTTGTCGCCTGGGAGTACTGGATTTTGCATTGTTTACTTGCATTCTCTCAGCCTTCAAACAATTCagctaatttagttttttttctatatcagctgttgaattaaattattgtgcACTTGTTTACAGTGAAACTGGAATGAACATGCATGTAGAatgtgtactttaaaaaaatcctgCTGTTGCTTCTTTTGTACATCGAAGATGAAATAAAGTTGTTGCTTTAGTTTCATATGCTTTGTGTTAGCGCTGTttattgtgtatctgtttttt

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG:

id description
K20067 STON1_2; stonin-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189694 lncRNA downstream 713157 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA downstream 717150 16834386 ~ 16836603 (-) True AMCG00000518
TU189691 lncRNA downstream 719427 16808261 ~ 16834326 (-) False G150729
TU189689 lncRNA downstream 724013 16805195 ~ 16829740 (-) False G150729
TU189602 lncRNA downstream 1320564 16232958 ~ 16233189 (-) True G150661
TU189830 lncRNA upstream 107182 17685565 ~ 17719171 (-) True AMCG00000529
TU189862 lncRNA upstream 186207 17764590 ~ 17765401 (-) True G150852
TU189863 lncRNA upstream 187564 17765947 ~ 17766735 (-) True G150853
TU189880 lncRNA upstream 200845 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA upstream 212679 17791062 ~ 17800956 (-) True G150865
AMCG00000535 mRNA downstream 886 17545363 ~ 17552867 (-) True AMCG00000535
AMCG00000532 mRNA downstream 45198 17481663 ~ 17508555 (-) True AMCG00000532
AMCG00000531 mRNA downstream 88051 17462406 ~ 17465702 (-) True AMCG00000531
AMCG00000534 mRNA downstream 93955 17456989 ~ 17459798 (-) True AMCG00000534
AMCG00000501 mRNA downstream 611185 16937777 ~ 16942568 (-) True AMCG00000501
AMCG00000511 mRNA upstream 19077 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000510 mRNA upstream 33651 17612034 ~ 17640564 (-) True AMCG00000510
AMCG00000529 mRNA upstream 133016 17711399 ~ 17718631 (-) False AMCG00000529
AMCG00000528 mRNA upstream 189700 17768083 ~ 17772745 (-) True AMCG00000528
AMCG00000523 mRNA upstream 195417 17773800 ~ 17789068 (-) True AMCG00000523
TU189692 other downstream 719427 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2262517 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2331010 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 2981321 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3727044 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 428713 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 833105 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 834457 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 835672 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 837139 18415522 ~ 18415841 (-) True G151090

Expression Profile