RNA id: AMCG00000535


Basic Information

Item Value
RNA id AMCG00000535
length 3354
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00000535
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17545363 ~ 17552867 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGGCTGTGTTTCGCGCACTCGCAGCTCCATCGCTCGGTATATAAAGGAGGGCGACGGCGAGCGGAGGACGGCTGGACGGCGCAGCCCTGGGGACTAGGAAAGAGAGCCAAAAGAGCGGATAGTATTTTAATTACCTTGTTttactgcatttctttttagcggggggttattttaaaaatctcgGAACTAGCCTGTTTTAGCCGTCTGTtgcgtgttttttgtttttaaaagcagttgTGCTGTCACACACACCCCGCTTGTATAATGGCGAGCTCGGCTAACTCGAACCCAGTGCCTAAACTGTACAAATCTGTAATAGAAGATGTGATCAATGATGTCAGAGAGCTATTCCTGGATGAAGGAGTGGACGAGCAAGTTCTCATGGAACTGCGGACGCAAGTTATCGTCCAAGACTCGAAGATATTACAACACATGAACGCCACAGGAATGAGTGCAGCCGCCACCGCTGCGACCTTGGCCTTGCCTACAGGTGTCAGTCCATACCAGCAGCTGATCACAAATCAAGGCCAAATCCTGCAAGTGGTGCGCGCGCCCAACGGGGCCCAGTACATCATCCAGCCCCAGCAGCAGGTGGTGCTGCAGCAGCAGGTCCTGCCCCAGATGCAGCCGGGCGGCGTACAGGCCCCGGTAATCCAGCAGGTTCTGACTCCCCTGCAGGGCGGGATCCCGCAGCAGACAGGCGTCATCATTCAACCGCAGCAGATCGTCATCTCTGGGAATAAGGTCCCCCAGAACCCCCAGGTCTTGCAAGCGGCCATGGCTGCACAGGCAGGGCAGGGAGCGGTgcaggtgcagcagcagcagcagcaacagcagcagcagcagcaacagcagcagcagcaacagcagcagcagcaacagcagcagcagcagcagcagcagcagcagcctcccATGATGCTCCAGGTGGATGGCGCAGGAGACACGTCCTCTGAGgaggacgaggaagaggaggacgagTACGACGAAGACGAGGAGGAGGACAAGGACAAAGACGGTGGAGATGATGGCCAAGTTGAAGAAGAGCCTCTGAACAGCGGGGATGACGTGAGCGACGAGGAAGGACAGGAGCTGTTCGACACTGAGAACGTGGTCGTGTGCCAGTACGACAAGatccACCGGAGTAAGAACAAATGGAAATTCCACCTCAAAGATGGAATCATGAACCTTAACGGAAGAGATTACGTGTTTTCTAAAGCCATCGGGGACGCGGAGTGGTAAAAATGactattttgtaaaataatgcaaGACACATCAAGACGTGGACTATATGCACTTTGGCTGATAAACGGGGGAATACGAGTAGGAGAAAaaccaacatcaacaacaaagaaaaccgATCTACTGGAAGTGTTAATAGCAACACTATGGTATACGAACAAGCCTCCCTCTTTATACAGCTTAAGTGTGATGtcagtttgtatatttataactTAATATTGCTGTTGACTGGTTTAAAACGACTGGAGTCTGGAACTTTCCTCCCCGCCCCCCCATCCCCTTTTTAACAGATGCATACACAGAACTAAAGTCACATTTCAGGGAATCTGTTCGTTTACATCGGTAGTCCAGTTAGAAGTATGTTTTCTTGCCAATAAACCTATTTTCATCCCGTATCGGAGTTGAAACCTCGGTAAATTGCAGACAACCTGTGTTTAGTTACCGTGGTTTTCGGTGTAGGTACCTGTTAAATTTGACACTAAGCTTCCAAAACCTACTGGGACTAGAAACGAAAAACGGTCATGTGAGATATCCGGTCTTGGATATTCGATTGACAAAGACTTGTCTTGTGAAGTGTTGTTGCCAGATGCAAGGTATGTTTGTCtccatctgtttgttttccacatggATTGTTTGTGACATCCTAATTATCTTAAAACCGCCACAGAAAAATCGCCACTGGCTTACATTTTTAGATTGTCGTTTTAACCTTTGTCTACTAGGGTCCGTACCGTACTTTTAGCAGCCAGGTCCTTTGCACTGTCCGTATTGAGTTCGGCTTTTGTGTTTGCGATGTCCAGTCGGCGGGAGCGTGGTAAATCCGCACGGGTTtaattttttcaatttgttgtCTGTCCGCGAAACGCCGTCACTAATGAGCCAGGGCCGCCTATTAGTCGAATGATGGTCGTGTTATCAGCTGTACGTTTttatacagtgcagtaaaatgtagtttattttttaatttattcctgTAAAGTTCGAACAATGGGAAATTGGAGCTGGTTAATTTgtgaacaacaagaaaaaaaaaaaaaaaaaacacccaccaAACTGTGCTCTTATTACAATACAAGTGTTCCTTTTAAGATACGTTTCTTCTGTGCGTCACACGTTCAACCCTTCAGTGTCCTCTCGGTATCGAACTTGAATTTTAACCGTGGGTTCTCCCTGTTTTCAGTACaccttttcatttcacttgGAAACGTAATATTTGAACTTgaatttgtttctctctgtaGTGGCTTACGTGTTTAAGCAGTATTGCATCGTTTGATAACATTAAAGGGTATGtaatgatgtttttattttattttttaaatctccacACATCTTGGTTGTGTCAAAGCCTTTCAAGTTTAACAAGATATTGATCTGAAGATTGTCCTTGAACATACTGTGTCAATGCCTGATATacacaatatttcaaaatggagTCAAGTCACCTGTCAATTGACCCAGACGATGCTGAAAAAAGCAATCCAACAATTAGTACATTTGTTAACGGCGCCTAGATACTGTACTTTGTCTGAAATGTACTGCTGTTGAAAGAAGTCAAAAGGCAAAATAGCTTGGAAATTTCTcatgtattaaaatgtgaacGTCTCCACAACATGGAAGTCCTTTCTTTGTgtaggtttaattaaaaatggagTTTGTCAAGGTCGtacctttttgttgtttgtgcctttcaatttatttcagcATTCAGGTATCGCATTCATCCAAACTAGGGAAGAGATGTCTTGAACATTGTGTATGTCGGCTtctttcattcaaataaaacctGTTTTCTACTGTTAATCTACCATCTGTTTCAACTGCTGTTGtacatactgtatgtgtaaGAGGGAAATCTATTTATTACGTTTGTATAATTCATTCTATACTGTTTTCGAAAATCAAGGTCGCTCTTTGTAATTTACACTGATCTGTTTAAAGGCCACGCTTTGAATACAATTAGAGAACTTAGTATTTTGTTGTACTAAGACCTATTTTGAGTTACCTAAATATTTTTGCCTTTGctaaacttttaattaaaagtattaataaaatgatATGTAGTCTGTGACCTCATTAGCAAAAGTTGCCTCTAAATATGGGCCCAGG

Function

GO: NA

KEGG:

id description
K03122 TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189694 lncRNA downstream 704767 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA downstream 708760 16834386 ~ 16836603 (-) True AMCG00000518
TU189691 lncRNA downstream 711037 16808261 ~ 16834326 (-) False G150729
TU189689 lncRNA downstream 715623 16805195 ~ 16829740 (-) False G150729
TU189602 lncRNA downstream 1312174 16232958 ~ 16233189 (-) True G150661
TU189814 lncRNA upstream 851 17553718 ~ 17574839 (-) False AMCG00000533
TU189830 lncRNA upstream 132698 17685565 ~ 17719171 (-) True AMCG00000529
TU189862 lncRNA upstream 211723 17764590 ~ 17765401 (-) True G150852
TU189863 lncRNA upstream 213080 17765947 ~ 17766735 (-) True G150853
TU189880 lncRNA upstream 226361 17779228 ~ 17800956 (-) False G150865
AMCG00000532 mRNA downstream 36808 17481663 ~ 17508555 (-) True AMCG00000532
AMCG00000531 mRNA downstream 79661 17462406 ~ 17465702 (-) True AMCG00000531
AMCG00000534 mRNA downstream 85565 17456989 ~ 17459798 (-) True AMCG00000534
AMCG00000501 mRNA downstream 602795 16937777 ~ 16942568 (-) True AMCG00000501
AMCG00000499 mRNA downstream 609566 16927608 ~ 16935797 (-) True AMCG00000499
AMCG00000533 mRNA upstream 886 17553753 ~ 17578383 (-) True AMCG00000533
AMCG00000511 mRNA upstream 44593 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000510 mRNA upstream 59167 17612034 ~ 17640564 (-) True AMCG00000510
AMCG00000529 mRNA upstream 158532 17711399 ~ 17718631 (-) False AMCG00000529
AMCG00000528 mRNA upstream 215216 17768083 ~ 17772745 (-) True AMCG00000528
TU189692 other downstream 711037 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2254127 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2322620 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 2972931 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3718654 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 454229 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 858621 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 859973 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 861188 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 862655 18415522 ~ 18415841 (-) True G151090

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035467 True 699 lncRNA 0.49 4 NC_007131.7 16447779 ~ 16453603 (-)