RNA id: TU189969


Basic Information

Item Value
RNA id TU189969
length 471
RNA type TUCP
GC content 0.52
exon number 4
gene id AMCG00000539
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18006674 ~ 18009850 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTGGTTCGCCCTGAAGAAAAGCAACACAGCCCTACATCATAGACGTGCAGGGAAAGGGAGATGGCACAGTTGTCGTTGTATCTCACGAACATAAACGTGTCTTTGGGACAGAATATGGACATGGAAAAGACCCCAGGTGTTGGGAAGGACTTCGAGAACGTCGAACTGGGCGAGATGGGCAAGAAGAAGGAGCAGAAGGTGCCCCGCAGGGTCATTCACTTCGCCAGTGGGGAGACCATGGAGGAGTACAGCActgatgaagaggaggaggagatacCCGAGAAGAAAGACCTACTCCCCACGTCCAAGCTGACCTGGGGACCATACTTCTGGTTTCACATGTGGAGAGTTGCCACCTCAACTATATCGGTGTGTGACTATATGGGAGAGAAGATGGCATCGCTCTTTGGCATCACCTCACCGAAATACCAATATGCCATCGACGAATACTACCGGGTGAAGAAGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189900 lncRNA downstream 129972 17876582 ~ 17877124 (-) False AMCG00000521
TU189880 lncRNA downstream 206140 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA downstream 206140 17791062 ~ 17800956 (-) True G150865
TU189863 lncRNA downstream 240361 17765947 ~ 17766735 (-) True G150853
TU189862 lncRNA downstream 241695 17764590 ~ 17765401 (-) True G150852
TU190005 lncRNA upstream 89728 18099578 ~ 18100896 (-) True G150965
TU190137 lncRNA upstream 295235 18305085 ~ 18307705 (-) False AMCG00000559
TU190156 lncRNA upstream 363948 18373798 ~ 18374097 (-) True G151071
TU190224 lncRNA upstream 427433 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 439694 18449544 ~ 18522790 (-) True G151122
AMCG00000538 mRNA downstream 8501 17976631 ~ 17998595 (-) True AMCG00000538
AMCG00000540 mRNA downstream 33183 17968032 ~ 17973913 (-) True AMCG00000540
AMCG00000544 mRNA downstream 63926 17941557 ~ 17943170 (-) True AMCG00000544
AMCG00000521 mRNA downstream 128746 17876369 ~ 17878350 (-) True AMCG00000521
AMCG00000522 mRNA downstream 133668 17867427 ~ 17873428 (-) True AMCG00000522
AMCG00000541 mRNA upstream 23227 18033077 ~ 18043323 (-) True AMCG00000541
AMCG00000548 mRNA upstream 141964 18151814 ~ 18160920 (-) True AMCG00000548
AMCG00000567 mRNA upstream 185635 18195485 ~ 18196999 (-) True AMCG00000567
AMCG00000564 mRNA upstream 227991 18237841 ~ 18244172 (-) True AMCG00000564
AMCG00000565 mRNA upstream 244450 18254300 ~ 18275467 (-) True AMCG00000565
TU189692 other downstream 1172770 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2715860 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2784353 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3434664 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 4180387 13823954 ~ 13826709 (-) True G150138
TU190177 other upstream 401638 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 402990 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 404205 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 405672 18415522 ~ 18415841 (-) True G151090
TU190562 other upstream 1324127 19333977 ~ 19336732 (-) False AMCG00000599

Expression Profile