RNA id: AMCG00000544


Basic Information

Item Value
RNA id AMCG00000544
length 1614
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00000544
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17941557 ~ 17943170 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTAGAGGATTTTTAGTCAAAAGGAGCAAACGGACATCTCTTTCATCGTACAGGATGCGCACTGAGGACAAAGATATACCACCTAATACGGATCAGCCCTCACAAGCTCTACAAGTGCAGACCATCAAACCTGTGAAGAACATCTGTTCCCATGCGCTGGCGTTAGGAGATATTCCCAAATcttttcaaagtgtttcagCAGAAACCGAAGAGGCAAAACTACCCGAGAGCGCAGAGAAAAGCACGGTTAAGGCAGACCTCCCTCAGACTAAGACCGGTCACCCAGAGCAAGGGTCACCGGGTCGGGCCGATGCCTCTTACAGCCCCATCAAGCCTGTGGGCACCGAACTGAAGAAAAACTTCTTTGAAAGATGTCTGAGCTCACCTGTGTCGGCGGAGTCCTTCCCGATCTCCACATCCGTGTCCCCCATAGAAAGGCTTCTCAGGCACCACTCCCACTTCTCCACTTCAGACGTCAAAATGGACACACCTGTTCACCTGTATTCGCCTCTGCCTCACGCCATGAAGCGCGCCCTGGTGGACTCCACGGAGCGCAAGAGCAAACCATCCGCTAAAAAGGCCAAAGCGATTCGAAAACTCAACTTCGAGGACGAGGTCACCACCTCTCCGGTCCTGGggctgaaaataaagaaagaaagtccCGAGTCTAAGGCGGCATCCTTGTCTGGACACAGGAAACCCCTTGGTGAGTTCATTTGCCAGCTATGCAAGGAAGAGTACGCCGACCCGTTTTCCTTGGCACAGCACAAGTGCTCCAGGATCGTCCGGGTCGAGTACCGCTGTCCCGAGTGCGACAAGGTATTCAGCTGCCCGGCCAACCTCGCTTCTCACCGCAGGTGGCACAAACCCCGTCCCGCTAGCCACGGAGAAGAGCAGAGGGTCAAAAAGGCGGACTCCGAGCAGCCATCTGTGGAGGGCAAGGAGAACGCCAGTCAGATGAACGACCAGCACCAGCCTCCCCCGGACAGTCCATGTCGGGTCCAGCAGCACCACGCCCTAGAGGGGCTCCCCGGACAGGAGCCGGCGGACAGGACCCTCTCTGTGGAGCCGCAGGTGAAAGCGGTGGAGAAGCGCTTCGATCAGCACCACCCCTCCGTGGACAGCTCCCGGGCGCTGGCGTCCTCCGAGGCCACGGATGCGGCCGCCGCGCCCTACCTGGCCTCCCCCGGGGCGGGCGAGGAGGTGTTCGAGTGCCGCTACTGCCGCAAGACCTTCCGCAGGCAGGCGTACCTGAGGAAGCACCTCGCCGCCCACGAAACAGCCAGGTCCTCCTCCTACAGCCAGCTAGAGAGCGGGCAGATCACCTTCCCCTGCCAACTCTGCGGGGCGCACTTCCCTTCGGCGGAGATCAGGGACAAGCACCGGCTCTGGCATGCCGTGAGGGAGGACCTGCTGGTCGGCGCGGGCAAGACTGCCGGCGCGCTGGGGAGGCAGGAGCTCCTGCAGGGGGAGCAGCAGATATTCTCCTGCAAGCACTGCCCCTCGACTTTCTTCAGCTCGCCCGGGCTGACCAGGCATATCAACAAGTCCCACCCGACGGAAAACCGACAGGTGCTTCTGCTGCAGATGCCGGTCAGACCAGGTTGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189900 lncRNA downstream 64433 17876582 ~ 17877124 (-) False AMCG00000521
TU189880 lncRNA downstream 140601 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA downstream 140601 17791062 ~ 17800956 (-) True G150865
TU189863 lncRNA downstream 174822 17765947 ~ 17766735 (-) True G150853
TU189862 lncRNA downstream 176156 17764590 ~ 17765401 (-) True G150852
TU190005 lncRNA upstream 156408 18099578 ~ 18100896 (-) True G150965
TU190137 lncRNA upstream 361915 18305085 ~ 18307705 (-) False AMCG00000559
TU190156 lncRNA upstream 430628 18373798 ~ 18374097 (-) True G151071
TU190224 lncRNA upstream 494113 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 506374 18449544 ~ 18522790 (-) True G151122
AMCG00000521 mRNA downstream 63207 17876369 ~ 17878350 (-) True AMCG00000521
AMCG00000522 mRNA downstream 68129 17867427 ~ 17873428 (-) True AMCG00000522
AMCG00000524 mRNA downstream 76275 17820771 ~ 17865282 (-) True AMCG00000524
AMCG00000523 mRNA downstream 152489 17773800 ~ 17789068 (-) True AMCG00000523
AMCG00000528 mRNA downstream 168812 17768083 ~ 17772745 (-) True AMCG00000528
AMCG00000540 mRNA upstream 24862 17968032 ~ 17973913 (-) True AMCG00000540
AMCG00000538 mRNA upstream 33461 17976631 ~ 17998595 (-) True AMCG00000538
AMCG00000539 mRNA upstream 63504 18006674 ~ 18009066 (-) True AMCG00000539
AMCG00000541 mRNA upstream 89907 18033077 ~ 18043323 (-) True AMCG00000541
AMCG00000548 mRNA upstream 208644 18151814 ~ 18160920 (-) True AMCG00000548
TU189692 other downstream 1107231 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2650321 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2718814 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3369125 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 4114848 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 63926 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 468318 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 469670 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 470885 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 472352 18415522 ~ 18415841 (-) True G151090

Expression Profile