RNA id: AMCG00000554


Basic Information

Item Value
RNA id AMCG00000554
length 2007
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00000554
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18420002 ~ 18425413 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTCGTTGTCCTGCTGGTGGGTTTATTCTGGACCGGACCGGGTGAGTGAAGGTGTTGGAGGAGCGGTCGGTGATGTCCAGGTGCAGGTCTTCTCGCAGATCGGGATGAAGGAGTGATGGTTGTGTACTGAGGGGGAGATTCCCAGTCGAGAGTTTGTGGGAACGAGCTGAACAGAAAGTTGTGACCTGCGGCCTATTTTGCTGCTCTGATGTAAGCCTGTTTGCAGGAATCATCGCAATAATATTCATGCAACAGTTGGAGGgaatcatttttgtatttgaaagttcTGTTTTGTGTCATCAACGTTGACTGATTTTAGTTGCTATTAAAGCACTAAACCTTAGCTTACAATGACTAACTTTTACGTCTTGAAGAAATCTGCTTTATAAACTGGTTAGTCTTTGGCACTGTTTCCACTTTGTGATCACTTtgattagttttaattaatgagCCAATCAATGACTGACACTTGCCTGATGTGCAAGGTCAGGTGATGCACAATCTTCAGCAGGCTGGGGCTACAACATGCAACATACATgttatgtgtataaaacatgcCATTGCGTCCCGTGTCAGAGCAGCCCGTGTTGACGTGATGGAGTGCTGCATGACGTCATGGCTCCTGTGCGCTGCGGCGCTGTACGTGCTGGTCCAGCTGATTCGGTTCGCCCGCGCAGACGCAGACTTCACCTTGCTGTGGGCTGCCGCGTTTGGAAGCAAGCCAGAGGACAAGCTGCGCGGCATGGTGGTGTGGATCACGGGCGCGTCCAGCGGCATCGGCGAGGAGTTGGCCTACCAGCTGGCCAGCCTGGGGGCGGCCCTGATCCTGTCTGCCAGGCGGGAGGACGAGCTGCAGAGGGTGAAGCGCGGCTGTGTGGAGAGATGCGGACTGCAGGAGAAGGACATCCTCGTTCTCCCGCTCGACCTGTTGGACAGGGGCAGCCACGAAGCCCTGGCGAAGACCGCGCTGGAGCACTGGGGCAGGATCGACGTCCTGGTCAATAACGGTGGCCGCAGCCAGCGCGCCCTGTGCCTGGATACCAGCCTGGAGGTGTACCAGGCGCTGATGGAGCTCAACTTCCTGGGCACGGTGTCGATCACCAAGCAGGTGCTGCCCCACATGGTGCTCCGGGGCGCCGGCACGGTGGCGACAGTCAGCAGCTTGGTGGGGCTGGCCGGGGCACCGCTGGCAACCGGGTACTCTGCCAGCAAGCACGCGCTGCAGGGCTTCTTCAACTCCTTGAGGACGGAGCTGACGGACAGTCCTGGAATCACCATCTCCACCGTGTGTCCTGGGCCGGTGCAGTCCAGCATCGTACAGAACGCCTTCACAGAGGAACTGGACAAGGCTCTTCCCATCACTGGGGACCAGGGGCACAAGATGCCCACGTCCCGCTGCGTCCGCCTCATCCTGGTGGGCGTGGCCAATGGGGTGAAGGAGATGTGGATCGCCCAGCAGCCCTTCCTGCTCTTCTACTACCTGTGGCAGTACACCCCCACCCTGGCCTGGGCGCTGACCAACCGTCTGGGCAGCAGACGGGTGCAGAACTTCAAGGCCGGGCTGGACGCCGACGCCGCCTATTTCACAAAACCCAAGACGAAGACCTCCTGAATCTTCTTCATTGTCTGACCCTTATAACGATGAACACTGTGTTGCTAATCACCCTAAATAAAGCTGTGTTGTCCACTGGGGTTTGCTTGGAGAGGAAATGGAAGTAAAAGTCGGTGCAGAGGTCCATTTAATATTTCACTCTTGAATGGAGTGAGGCGATTCGGCACTTCTGGAGTTTTAATGCACCTGCTACTGCacgatataaataaatatatataaacacactgcCGGCTCTGCCAGTAAAAGCGATCGAGTGGCGGAACATAATGCAGCTTTTAAAGCAGACCCATGTCCCCCATCCACCTGAAACGGCAGCGTGTTAAGAGCCCCGCGAGGCGGACAATGGCAGGCCGGGGCGTCGGACGGAGAGTGCGTCAGCCAGGGCTGTTCAGCG

Function

GO: NA

KEGG:

id description
K11165 DHRS7; dehydrogenase/reductase SDR family member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190156 lncRNA downstream 45905 18373798 ~ 18374097 (-) True G151071
TU190137 lncRNA downstream 112297 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 319106 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 542878 17876582 ~ 17877124 (-) False AMCG00000521
TU189879 lncRNA downstream 619046 17791062 ~ 17800956 (-) True G150865
TU190224 lncRNA upstream 11870 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 24131 18449544 ~ 18522790 (-) True G151122
TU190240 lncRNA upstream 69236 18494649 ~ 18565715 (-) True G151133
TU190259 lncRNA upstream 157995 18583408 ~ 18584113 (-) True G151150
TU190279 lncRNA upstream 219456 18644869 ~ 18646177 (-) True G151167
AMCG00000560 mRNA downstream 30334 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000556 mRNA downstream 58116 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000557 mRNA downstream 72018 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000558 mRNA downstream 106227 18311055 ~ 18313775 (-) True AMCG00000558
AMCG00000559 mRNA downstream 112209 18305131 ~ 18307793 (-) True AMCG00000559
AMCG00000574 mRNA upstream 86633 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000575 mRNA upstream 100214 18525627 ~ 18533841 (-) True AMCG00000575
AMCG00000576 mRNA upstream 140952 18566365 ~ 18569134 (-) True AMCG00000576
AMCG00000582 mRNA upstream 176472 18601885 ~ 18602337 (-) True AMCG00000582
AMCG00000570 mRNA upstream 322637 18748050 ~ 18755308 (-) True AMCG00000570
TU190180 other downstream 4161 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 5444 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 6537 18412840 ~ 18413465 (-) True G151088
TU190177 other downstream 7477 18411488 ~ 18412525 (-) True G151087
TU189969 other downstream 410152 18007096 ~ 18009850 (-) False AMCG00000539
TU190562 other upstream 908564 19333977 ~ 19336732 (-) False AMCG00000599
TU190711 other upstream 1218537 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 2206676 20632089 ~ 20634946 (-) True G151593
TU190947 other upstream 2321258 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 2501336 20926749 ~ 20935429 (-) True AMCG00000653

Expression Profile