RNA id: AMCG00000556


Basic Information

Item Value
RNA id AMCG00000556
length 1770
RNA type mRNA
GC content 0.69
exon number 4
gene id AMCG00000556
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18357174 ~ 18361886 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAATTACGCACGAGCGGAGGACGTAGGAGTGCCGTACCTGAGGAACCTGGCTCGTACACGGGCAGCCGGCTTCCTCCTGGGAGTCCTAGTGCCACGCAGTGGGGACAGCCTACTCCAGAAGTCGGTGGGCGGTGACGATGCTGACCTCTACACCTCCCTGCTGTCCGGCCAGAGCTTCGCCTTCCAGCCCGACACGTCCTACTTCTCCGGGGAGCTACCGCTGCCCGAGGGCCCGGGGAATCGGCAGCAGGAGGAGGACGAGCCAGCGCTGAAACTGAAACACGCAGAGTCCAAAACGGAGACCCGCGACCGCATCCCCAGCCTGGAGTCGCACGGCATGTTCAGCTCAGACTCGGGCATCGAGATGACCCCTGGGGAGTCCATCGACGTGGCCAAGAACCTCATCCTTGAGTCGGAGAAGATGGAGCCTTACAACTACCTGGACATCAGCAGCTCCGAGGGTCCGAGGGGGCCGCTGCCCCAGCAGCCTCCGCACGAGACGTCGCCAGAGAGCTGGACGACGGGGATGGGTGGCAAtggcacccccacccccccagacaTGCTATCGAACCTCGGTGACTACTCCGACAAGACCCCCCCCAAGCCCCTGGAGGCCGTGGCGCCGGCGGAGACGCTGGGTGCGGCGCTGGACGAGCAGGCTTTCCCCTACGTGGAGGACCCGTCGGACGAGGAGCTGTCTGACTACCAGTCGTACCGCAGCCTGGGCACGCCGCTGACCGCCAGCCCGGTGCGCATCACGCTGACCCAGAGCAGCGCCGTGCCCCCGCCCCCCGCGCCGCCCGTCGCCGTGTCGGAGAAGGAGAGCATCCTGAGCCTGGGGCTGGAGGGCGTGCCCACTGTCACCCTGTCCGAGCCCGAGGACGACAGCCCCGGCTCCTCCACACCGCCCCTCACAGGTACACCTTATTGCACCATGACATTTTTCGaGGAGTCAGAGTCCCTGTCTGAGGCGTCATTCCAGGCAGACCAGGGAAAGCCGGATCAGGGCACCGCCGCGGCCCCGTGCCCCACCGTGAAGCCCGGGCCCCCCAAGTCCCCGGCCTCTCCGGCTCTGCCCACCACGCAGGACCCCGAGGCCAGCAGCGCCGAGTCGGGCGACTCCGAGATTGAGTTGGTGTCGGAGGAGCCGCCGGCCCCAGAGGAGCTGCCCGGCTCCGGGTACATGAGCTTCGGACAGATGGGGGGTCCGCTGCCCTCGCCCGCCTCGCCCTCCATCCAGTACAGCATCCTGCGTGAGGAGCGCGAGGCAGAGCTGGACAGCGAACTGATCATCGAGTCCTGCGATGCCTCGTCCGCCTCCGACGAGAGCCCCAAGAGGGACCAGGACTCCCCCGCGCCCCGGCTGGCCGAGTCCCCCGCGCCGCCCGTCCCGGCCCTCACCTCGCCCATCCCCCCAGAGCCCCAGCCCGGctcccagagagagaggcagcccAGTGACAGGGGCCAGAGCGGGACCGCCACGGAGGACAGGGCCGCGGCCGGCACCAAACCCCAGCCGGCCCCTTTCCTGCCCCCCGAGGTGCGAGTGGAGCCCGCTGCCCCCGAGGACAAGGGGCAGAAGAAGCCGGGCCAGAGCCGGGCCGCCGAGGGCCGCAGGGAGTCGGCGCGGGATGCGGGCGCAGACCGGATGGGCTCCACCTCTGTGCTGCGGGGCTTCGACAGACAGAAAGAGACACTGTTGACCCTGTGGTCAGTCCTCGCTCCAGTCCGGTCTTACATTGCAGAGGTCAGCAACCAAGCCGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190137 lncRNA downstream 49469 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 256278 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 480050 17876582 ~ 17877124 (-) False AMCG00000521
TU189880 lncRNA downstream 556218 17779228 ~ 17800956 (-) False G150865
TU190156 lncRNA upstream 11912 18373798 ~ 18374097 (-) True G151071
TU190224 lncRNA upstream 75397 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 87658 18449544 ~ 18522790 (-) True G151122
TU190240 lncRNA upstream 132763 18494649 ~ 18565715 (-) True G151133
TU190259 lncRNA upstream 221522 18583408 ~ 18584113 (-) True G151150
AMCG00000557 mRNA downstream 9190 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000558 mRNA downstream 43399 18311055 ~ 18313775 (-) True AMCG00000558
AMCG00000559 mRNA downstream 49381 18305131 ~ 18307793 (-) True AMCG00000559
AMCG00000566 mRNA downstream 70839 18283337 ~ 18286335 (-) True AMCG00000566
AMCG00000565 mRNA downstream 81707 18254300 ~ 18275467 (-) True AMCG00000565
AMCG00000560 mRNA upstream 17902 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000554 mRNA upstream 58116 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000574 mRNA upstream 150160 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000575 mRNA upstream 163741 18525627 ~ 18533841 (-) True AMCG00000575
AMCG00000576 mRNA upstream 204479 18566365 ~ 18569134 (-) True AMCG00000576
TU189969 other downstream 347324 18007096 ~ 18009850 (-) False AMCG00000539
TU189692 other downstream 1522848 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 3065938 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 3134431 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3784742 14569962 ~ 14572432 (-) True AMCG00000436
TU190177 other upstream 49602 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 50954 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 52169 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 53636 18415522 ~ 18415841 (-) True G151090
TU190562 other upstream 972091 19333977 ~ 19336732 (-) False AMCG00000599

Expression Profile