RNA id: AMCG00000557


Basic Information

Item Value
RNA id AMCG00000557
length 1694
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00000557
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18336931 ~ 18347984 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCccctcaccaccaccaccaccactctcgctctctctcgttctttctctctcgctcgctctctttctctctctctccccctccctctctctcccctctctcttctctcgctctctctcttggcCATTCATGCATTGGGATGCTTAAGTGAGAAAAGCAGAGCCACAGCCGAAGAGTCAGTTAAACCCCTTTGTTGCGCCAGCATGCAGACCAGCACCGAACCCACGAAGACCCACGAGTGCCTCTGGACCAGCTGGAAATGCCATGCGATCGACCTGCTGTACTGGCGCGACCTGAAGCAGACGGGCATCCTGTTCGGCAGcgtcctgctgctgctcttctCACTCACCCAGTTCAGCGTGGTCAGCGTGATCGCCTACCTGGCCCTCGCCGCGCTCTCCGCCACCATCAGCTTCCGGATCTACAAGTCCGTGCTGCAGGCCGTGCAGAAGACTGACGAGGGACACCCGTTCAAGTCCTACCTGGACGTGGAGATCTCTCTGTCTCAGGAGCAGATCCAGAAGTATGCCGACAACGCCCAGAGCTACGTCAACAACACACTGAAGGAGCTGCGCCGGCTGTTCCTGGTGCAGGACCTGGTGGACTCACTAAAGttcGCTGTGCTCATGTGGTTGCTGACGTATGTGGGAGCTCTCTTCAACGGCCTGACGCTGATGATCATGGCCGTGGTGTCCATGTTCACGATGCCGGTGGTCTATGAGAAATACCAGGCGCAGATCGACCAGTACCTGGGGCTGGTGAGGACTCACGTCAACTCCGTGGTGGCAAAGATTCAAGCGAAAATCCCTGGTGCGAAGAGAAAGGCGGAGTAACCTGGTCCGCCCCGGAGCGGGAGAGAGGGCGAGCGCTGGATGGCGGTCGAAGAAGCCACACTCTACCGGAGCGTCCTACCATTTGTCAGCACCttggtattaaaaacaaacacacaaaaatacaagaaaaaataaaaaccaaccTTGCAGCACTGGAGAAGCCCCGCCCCCCGGGTTTCTCTAGCCCTAGAGCATCTCGCTGGCCACGCCCACGCACTAACGTACCGTACGGAAATAAAgcgaaacagaacaaaacaagacaaaaaaaaaatcctaggtgtttttctttgtgttgcttATCAAGTGCATGATGTCGAGAGTCTTGAGTAATACTATTTGATATCTTTTTagtgtcttttaatttttttggctACTTTTCTTTAGCAGTGCTGATGAGTTTTACTGTGTCTGTGGCGAAGGCTTGTCTGGGCTCTGCTGCGATAGTTTAAACTGCTTCTGTCACTGGAACCGGGGGGGGCTtctctttattatatatatatatatataaatatacaacagaTAGAATTGTggactaatgttttttttcgGTGTTTTCCAGCACaagataatgaaacaatgtACTGATTAGATATGGTAACTGTAGCATTTGGTTTTGTAATAACTATAAGGAACTACACAACTCATGTTTTTAGGTACTGTTGTTGAACTACTCAAGCGGCGGGGGGGCGTGTTTAACCTGCCTTGTAATAATGTTCGATGTAGTTCTCCTTTATTGGTCATGGACTCTTAACTCTCTGCACTTCTATGATGTACTCATTAATGAATGCGAAAATAAATGTTCCTAAATGTACAACGTTTTCTATTTTCGCATCATTGGGGAAGTACCGgctcacattaaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20721 RTN1; reticulon-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190137 lncRNA downstream 29226 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 236035 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 459807 17876582 ~ 17877124 (-) False AMCG00000521
TU189880 lncRNA downstream 535975 17779228 ~ 17800956 (-) False G150865
TU190156 lncRNA upstream 25814 18373798 ~ 18374097 (-) True G151071
TU190224 lncRNA upstream 89299 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 101560 18449544 ~ 18522790 (-) True G151122
TU190240 lncRNA upstream 146665 18494649 ~ 18565715 (-) True G151133
TU190259 lncRNA upstream 235424 18583408 ~ 18584113 (-) True G151150
AMCG00000558 mRNA downstream 23156 18311055 ~ 18313775 (-) True AMCG00000558
AMCG00000559 mRNA downstream 29138 18305131 ~ 18307793 (-) True AMCG00000559
AMCG00000566 mRNA downstream 50596 18283337 ~ 18286335 (-) True AMCG00000566
AMCG00000565 mRNA downstream 61464 18254300 ~ 18275467 (-) True AMCG00000565
AMCG00000564 mRNA downstream 92759 18237841 ~ 18244172 (-) True AMCG00000564
AMCG00000556 mRNA upstream 9190 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000560 mRNA upstream 31804 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000554 mRNA upstream 72018 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000574 mRNA upstream 164062 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000575 mRNA upstream 177643 18525627 ~ 18533841 (-) True AMCG00000575
TU189969 other downstream 327081 18007096 ~ 18009850 (-) False AMCG00000539
TU189692 other downstream 1502605 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 3045695 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 3114188 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3764499 14569962 ~ 14572432 (-) True AMCG00000436
TU190177 other upstream 63504 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 64856 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 66071 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 67538 18415522 ~ 18415841 (-) True G151090
TU190562 other upstream 985993 19333977 ~ 19336732 (-) False AMCG00000599

Expression Profile