RNA id: AMCG00000558


Basic Information

Item Value
RNA id AMCG00000558
length 837
RNA type mRNA
GC content 0.65
exon number 3
gene id AMCG00000558
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18311055 ~ 18313775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGACAGAGCTCGACGACACAGAGCCAGTGACCGGAAACACACCGTCCGCTATGAGTGGGAGGAAGAgcgagagatggagagagagagagagagagaggtggcaGGGCAACAAAAGACACCAAGTGACCGTGTCGACTGGACTTCACCGATCCGAGGCTCAGCGCACTATGAGCGCCCCAGCTGTAGCCATGCCTCTGTTCGGCTGGATGAAGTGGCCGCGGGGGGACGGGGAGCGTGAGCGGGGGGCGCGTGCCGGGGAAGGGGTCCTGCCCGGTAAGACGCTGATGCGGGAGCTGCTGTGGCACGTGGAGGAGCGTGGGCGTCTGGAGCGTGAGTTGGAGAGGGAGCACCGGCTGGCTCATGGCACGCCGGAGTACCACTGGCTGCACCGGTACCCCTCCCTGCGCTCCCTCGTGCCCCCCTCCGAGCGGCGCCAACTGGAGCACCTGTGCGCCCAGATCCAGCCCACGCAAACCGCCACCGTACTCTCCAGGTTTCGGGAGGTGCTGGCGGGCAACGACGTCCTGCCTTGGGAGCTGGTGTACGTGTTCAAGCAGGTGCTGAAGGACTTCATCAGCAGGGAGCAGGAGGAGCGGCAGCAGCTGCGGCTCATGGAGTCCTGGACCAGCCGCTACCAAGTGAAGCCAGACAACGCCGCGGCCCCTGTGCCCGACTGCGCCGATGCCCCGAAGGAGGAGATCCCCACCATCTCCAGCTACGTGGACCGCAGCATGAGAGGGGCCTGCCCCTACCTCGCCCAGAGGGACTGGGACCTACCCTACTACTGCCCCACCCCCTACAGCTGCCCCGACACCTACAGCACCACGCTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190137 lncRNA downstream 3350 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 210159 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 433931 17876582 ~ 17877124 (-) False AMCG00000521
TU189880 lncRNA downstream 510099 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA downstream 510099 17791062 ~ 17800956 (-) True G150865
TU190156 lncRNA upstream 60023 18373798 ~ 18374097 (-) True G151071
TU190224 lncRNA upstream 123508 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 135769 18449544 ~ 18522790 (-) True G151122
TU190240 lncRNA upstream 180874 18494649 ~ 18565715 (-) True G151133
TU190259 lncRNA upstream 269633 18583408 ~ 18584113 (-) True G151150
AMCG00000559 mRNA downstream 3262 18305131 ~ 18307793 (-) True AMCG00000559
AMCG00000566 mRNA downstream 24720 18283337 ~ 18286335 (-) True AMCG00000566
AMCG00000565 mRNA downstream 35588 18254300 ~ 18275467 (-) True AMCG00000565
AMCG00000564 mRNA downstream 66883 18237841 ~ 18244172 (-) True AMCG00000564
AMCG00000567 mRNA downstream 114056 18195485 ~ 18196999 (-) True AMCG00000567
AMCG00000557 mRNA upstream 23156 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000556 mRNA upstream 43399 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000560 mRNA upstream 66013 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000554 mRNA upstream 106227 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000574 mRNA upstream 198271 18512046 ~ 18515368 (-) True AMCG00000574
TU189969 other downstream 301205 18007096 ~ 18009850 (-) False AMCG00000539
TU189692 other downstream 1476729 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 3019819 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 3088312 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3738623 14569962 ~ 14572432 (-) True AMCG00000436
TU190177 other upstream 97713 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 99065 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 100280 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 101747 18415522 ~ 18415841 (-) True G151090
TU190562 other upstream 1020202 19333977 ~ 19336732 (-) False AMCG00000599

Expression Profile