RNA id: AMCG00000559


Basic Information

Item Value
RNA id AMCG00000559
length 1358
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00000559
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18305085 ~ 18307793 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGAGCAGTTTTTCTCTGCTGCGCCGCTTGGTCTCCCGCCGCCAGGGGGCGCTGCTCGGAGCCCCGGGGCTTTGAACAGCTCGGCCCGGTCGATCCCAGAACACACTGCGGCAGCTCCGTTCATCAGTGACCTTCCTTCCCTGGCGAGACACAGCGCGTCGCAGGCAAGATGATCGCCCGTGCAGCCAAGAACTGGTGGACAAACATGAGGCCGTACTACGCTCATGCGTACCAGGAGTTGTGGGTGGGTGTGGGCGTCATATGGCTGGCCTACGCCAAGATGTCTTCTAGTGCGAGTAAAAAAGCCATCAAGGACAGTAAGTATCTCTTTATAAAGCCCTTCTCTTCCAGTAATGCTGACCGCTGGACTGTCTGCTCCTAGAGTTTGTGTAGATGGGCTCTAGTTTTGTGTCCAGTAACTGCCAGGATCGTGAAGATGTGTAAAATGACAACCGCTAAAGCAAAACGTTTAGTTTGTGTGTCGGTTAAAATGGGAGATTGCAGTAAATGCACTGTTCACTGTGAAAAAGACAAACTGTAATCGAACACCCAGGTGCACTTTAAATAGCCAAACGGTGAGGTGTGGGTTAGTGACTGGTCTGACAGAGCAGCTGTTTCACAGATCTGTCCAGCTTTTacacagggatgtaaacaaaacaaaacgccTCCTGCATGTTGATCCAGGGCAGGCTGTGCTGCTTTTTTAATACATCTGAATAATCGTGCTAATTAAAAGTGCTTTGCTAACCCTGAGTTTCATCTCCTGCAGAGGGACACCACTGATTCACCTGACGTGGTGCTGTGATACTCGTCCCCCCCGTGTCCCCCTCTCTGAGGCGTCCGCATCTCTTCTACACATTGTTCACGAAGCCGTTTGTCCGTGTTTTGCAGTGAATAAAAAGGCCTGATGGGAACATCTGTATGGCAGCTGTGAAGTGTCCAGTTCATTGTGTGATTTCAGATGATATTTCTCAAATGTCTTTCCTCTAGaacagggattcccaaaccTGTCCCAGAgtccccctgccctgctgtccTGCTGCTGTTGCAACTAAGcacttaattgcttaattgaatcctgaATCGATATAAGGCAATTTAactaaataatgcaattaagaGCTCGGTTGAAACCAAaagcagcagggcagggggtgcTCCTGTGTCCCACCCTGACATGAATCCACAGACATCGTCACTTTGGTTCTCTGGAACATTAGACCGCGACTCCGGGTATTAATCTGTAGATCATCCTCTGCAGGTCTGACACTTAAGCTTGTACTGTATCTGCCCTTTTTCTGTTCAATATAACTTCAGACAGTCCGTAATAAAACTTGATTGATCCTATTTGCTTCA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098656 anion transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:0045333 cellular respiration biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190005 lncRNA downstream 204235 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 428007 17876582 ~ 17877124 (-) False AMCG00000521
TU189880 lncRNA downstream 504175 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA downstream 504175 17791062 ~ 17800956 (-) True G150865
TU189863 lncRNA downstream 538396 17765947 ~ 17766735 (-) True G150853
TU190156 lncRNA upstream 66005 18373798 ~ 18374097 (-) True G151071
TU190224 lncRNA upstream 129490 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 141751 18449544 ~ 18522790 (-) True G151122
TU190240 lncRNA upstream 186856 18494649 ~ 18565715 (-) True G151133
TU190259 lncRNA upstream 275615 18583408 ~ 18584113 (-) True G151150
AMCG00000566 mRNA downstream 18796 18283337 ~ 18286335 (-) True AMCG00000566
AMCG00000565 mRNA downstream 29664 18254300 ~ 18275467 (-) True AMCG00000565
AMCG00000564 mRNA downstream 60959 18237841 ~ 18244172 (-) True AMCG00000564
AMCG00000567 mRNA downstream 108132 18195485 ~ 18196999 (-) True AMCG00000567
AMCG00000548 mRNA downstream 144211 18151814 ~ 18160920 (-) True AMCG00000548
AMCG00000558 mRNA upstream 3262 18311055 ~ 18313775 (-) True AMCG00000558
AMCG00000557 mRNA upstream 29138 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000556 mRNA upstream 49381 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000560 mRNA upstream 71995 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000554 mRNA upstream 112209 18420002 ~ 18425413 (-) True AMCG00000554
TU189969 other downstream 295281 18007096 ~ 18009850 (-) False AMCG00000539
TU189692 other downstream 1470805 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 3013895 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 3082388 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3732699 14569962 ~ 14572432 (-) True AMCG00000436
TU190177 other upstream 103695 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 105047 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 106262 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 107729 18415522 ~ 18415841 (-) True G151090
TU190562 other upstream 1026184 19333977 ~ 19336732 (-) False AMCG00000599

Expression Profile