RNA id: AMCG00000560


Basic Information

Item Value
RNA id AMCG00000560
length 1770
RNA type mRNA
GC content 0.64
exon number 10
gene id AMCG00000560
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18379788 ~ 18389668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACACAGAGCGATAAGCAAAAGGCGAACGGAGATGAAGAAGTCATCAAGGAGCTGTGCATGGCCAACGGGGTGTCATACGAGCGGCTGCCCCAGGAGGGGAGCTGCGTGTCGGCGCTAGAGGTGTTCTTCTCAGGGTACCCCCGCCTGGTGGGGCTCCCTTTCTTCCCCCGGCTGGCCCGCTTGACGGTGGTGGGGCAGAGCGTGGCGACCCTCGAGGGGCTGGACTCCTGCACTCTGCTCAGGGAGCTCTGGGTCGCCGAATGCCAGCTGACCgagatCTCCGGCCTCCAAGCCTGCCTGCGGCTACAGAAGCTCTTCCTTTACGACAACAAGATCGGCAAGATCGAAAACCTGGACGCGCTGGAGGGCCTGGAGGTGCTGTGGCTGAGCGACAACCGCATCTCCGCCGTTGAGGGTCTGGACGCTCTGAGGAACCTAAGGGAGCTGAACCTCGCCGGCAACGCCATTGAGCACATCGGCCGCAGTCTGGACCCCAACGTGGCTCTTGAAAGTCTGAACCTCTCTGGAAATAAAATCATCTCTTTTaagGAGCTCACGGCTTTGGCCCGCCTGCCCCGTCTGAAGGACCTGGGCCTGAAGGACCCCCAGTACCCCCCCAACCCCGTGTGCCTGCTGTGCAACTACGCCACACACGTGCTCTACCACCTGCCCGGGCTGCACCGGCTCGACACGTACAGCGTCGACAGCAAGCAGGTCAAGGATGCGGCTGAGACCACCGTGTTGAAGAAGGCGATGTACTACAACATGCGTGTGAAGGCGGTGCGGAGGCAGCTGGTGGGGGCACGGAGCCGACTGTCCGAGAGCAGGGAGAGCCTCCTACGGCTGCCTGAGGAGAGGATTCGAACCCTGACCTTCGCTCTCAAACACCTGGAGATGGAGCTGTCGGAGGTCGCAGTGTCCGGTGGGAGGCCCTTGGAGGAGGCAGAAGACCCCGGCTGCTCGCCCCCTGCGGATGGCACTGCCGGGTACCCGGAGCAGCAGATCCTGTGCAAACTGGAGGCCCTGCAGGAGAGGCTGGTggtggtgtgtggggggggcattGTTAAACTGCACGATCGCTCAACTCTGCGACTAAACAAAGTGCACAAGTTCAGctccgccgccgccgccgcgcCCCCCCAGCAGACGGTTAACGGCCGCAGCCGCGTCCCGCTCCGTGCCCCCCGCCCGCCCAGCCGCGCTGACGTCACCGCCACGCCGAGCCAAACGAGCCATTTTCACATGCGTGCTGGTCCGCCGGAGCGCAGCCGGGCTCAGACTCCGTCCCCACGCACTGCTCCGCTCTCCTCTGGgtgttctctcctctcctcttctctcctcttctcttctcttcttctcctcccccctccctccccagcccAGCAGAACTGCGCTTCCCTGTGGCGGCCAGTGTTTCCAGTCTCCGAGAGTAGAGCCAGCATGTCTGCGAAGCCCGGCGGAGAGTCTGGCTCGGGAGGGCGATGGTTGGACGAGGATGCGGGCTCTGGGAGTCGGTTCGGCCCGGCCGGAGCGGACCTGGGCGGCGGTGGGGCTCAGCCGGACCGGGAGGGGGGACCCGGCGGACGACCACCGACACGGCCCCCCGTCGCCATGGAAACTGCCTCCACAGCCAGGGTAGCTATTCCTCCAGGGCAGGTCCTGATGAAAGGCTTTGGAGAGGCTGCTTCTGTCCCGAGCCCGGAAGTGCAGCACAATCCTGCCTGCGGAGTTTACGGTCAATGGGTCCTGATAGCTATGCAACCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190156 lncRNA downstream 5691 18373798 ~ 18374097 (-) True G151071
TU190137 lncRNA downstream 72083 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 278892 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 502664 17876582 ~ 17877124 (-) False AMCG00000521
TU189880 lncRNA downstream 578832 17779228 ~ 17800956 (-) False G150865
TU190224 lncRNA upstream 47615 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 59876 18449544 ~ 18522790 (-) True G151122
TU190240 lncRNA upstream 104981 18494649 ~ 18565715 (-) True G151133
TU190259 lncRNA upstream 193740 18583408 ~ 18584113 (-) True G151150
TU190279 lncRNA upstream 255201 18644869 ~ 18646177 (-) True G151167
AMCG00000556 mRNA downstream 17902 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000557 mRNA downstream 31804 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000558 mRNA downstream 66013 18311055 ~ 18313775 (-) True AMCG00000558
AMCG00000559 mRNA downstream 71995 18305131 ~ 18307793 (-) True AMCG00000559
AMCG00000566 mRNA downstream 93453 18283337 ~ 18286335 (-) True AMCG00000566
AMCG00000554 mRNA upstream 30334 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000574 mRNA upstream 122378 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000575 mRNA upstream 135959 18525627 ~ 18533841 (-) True AMCG00000575
AMCG00000576 mRNA upstream 176697 18566365 ~ 18569134 (-) True AMCG00000576
AMCG00000582 mRNA upstream 212217 18601885 ~ 18602337 (-) True AMCG00000582
TU189969 other downstream 369938 18007096 ~ 18009850 (-) False AMCG00000539
TU189692 other downstream 1545462 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 3088552 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 3157045 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3807356 14569962 ~ 14572432 (-) True AMCG00000436
TU190177 other upstream 21820 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 23172 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 24387 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 25854 18415522 ~ 18415841 (-) True G151090
TU190562 other upstream 944309 19333977 ~ 19336732 (-) False AMCG00000599

Expression Profile