RNA id: AMCG00000575


Basic Information

Item Value
RNA id AMCG00000575
length 4368
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00000575
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18525627 ~ 18533841 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGATTGTGGTGTGTAATTGTTCACACACTGACTCCATGTTGCACATACATAAGTGCGTATAATTGCATGTGTGCAGTTTTAATGACTTAATCAAGCCGACTTAATCAAGTGTATGTCAGTCTGCGCCGGGTGTCTTTGCACAGCAGACGCGCATTTCTGGCACTGCAGCTGCCCGCCGCGGGGGGAGTTTCTCCGCACAGCCGCCGCTCACCTTGTCCAGGTAAGCGCATCGTGCGGCAGGTTTGATTGGCAGCTCCTGTGCAAACATGCGTCTGCGGATTGCGCTCGCTCCTCCCCGCAGAGCGCCGGGCGGCGAATGGGAGAGCGACCCCCTTCTGCCACAGTGCGCGGAGCGGAGTCACGCCGGAGAGAGGAgcggagagagacagagggagccCTATCCACTTACAGCCGCCGCCAGATACCTGATAGTGTGTGCATGGCGAGCGGAAACCTGATCGGCTGAGCCCTGCCGCAACCAGGAGGAGTGACCTACCAGGAAGCTCAGAAAACATGTCTTCTTCCTCCCCGAGCGAAGTCAGAAGTGCCCCGGAGATCAAGAAGGAAGATGTGAGAGCGGAGAGACGGGAGCTGCCGGCGCTGGACTCTGCGGAGGTGCCCATGGCGCACGCAACTTCAGCGGCAGGAGAAGACGAGCTCCACGGCGAACTTCTGCTGAGCGCCACCTCCTCCCTGGCTTTCTCCCCGGGGCAGGTCGCCTGTGTGTGCGAGGCTCTGCAGCAGGGGGGCAACGTGGACCGGCTGGCCAGGTTTTTGTGGTCCTTGCCTCAGAGCGACCTCTTACGTGGCAACGAAAGCATCCTGAAAGCCCAAGCGCTGGTCGCCTTCCACCAGGCGCGCTACCAGGAGCTGTACAGcatcctggagagccacagctTCAGCCCGAGCCACCACGCCTCCCTGCAGGACCTGTGGTACAAAGCCCGCTACACCGAGGCAGAGAAGGCGAGGGGGCGGCCGCTGGGCGCCGTGGACAAGTACCGGCTGCGGAGGAAGTACCCCCTGCCCAGGACCATCTGGGACGGGGAGGAGACGGTGTACTGCTTCAAGGAGAGGTCCCGCAACGCGCTCAAGGATCTGTACAAGCACAACCGCTACCCCTCCCCGGCCGAGAAGAGGAACCTGGCCAAAATCACAGGGCTGTCCCTGACCCAGGTCAGCAACTGGTTTAAGAACCGGAGGCAGCGGGACAGGAACCCGTCCGAGGCGCAGAGCAAGAGCAGCCCGGCCCTCTGTGGCCCACAGTGCGGACCTCCGGAGTCGGAGGGCAGGGAAAGCCTCCCACTGCCAGGCAACAGGAGGGCTCGCTTCCATGTGTGCTGCTTTAGCCCCGGGATTAGGGCAGGTGAGTCTGACGGCAACCACAGCACAGAGGACGAGTCCAGCAAGGGGCAGGACGACCTGTCGCCGCGGCCGCTGTCCAACTCCTCGGACAGCATGGCTGGACACGGCGCGCCGGGGCTGACCAACTCGGCGGACAGCGTGATCATCCAGCAGATCGGGGACACGGAGATGTCTTCGAGCTCCGCCGGCAGCGTGGTCTTCAATGGCAACCTGGTGACCGCGAACTCTTCGGTTTTCCTTAACGGCAGCTCCTACATCCAGGCTCCGGGCAACATCCTCTTCAACGGGTTGAACCTGGGGTCCGGACAGCCTATCGCCTTCAACTCTCTCCGGCCCACCACCAGCCTGCTAGCGGGCAACAATGGGGACGCTGTTCTACACGAGGACAAGGACTTTAAGGTTCTGAACGGACCGGTGCCGAGCTCTGCTCTGCCGTACAGTGTGAGCGCGCTCGGATCCCCCTTCCCCCACGGCGCCAATGGCGGAGAGGTGAAGATGGAGGGGGTGCACTCCCTGGCCTCTCAGGACGGCAGCTCTGTAGTCACCTTCACCACCTCCACCGGCCCCCTGCAGCTCGGCCAGTACAGCCTGGTCCACATCCCCACCGCTGACACCGATGGACCTCCGCTCAACGGAAACGGGTTGCCGTCGCTACAGATGCCCCCCGTCTCCTCCGTACACTCCCACCATGGTAATGTGTTGCTGAACAGCGTCCAGGGGGACCCCTCCTTCTCCAGCGCCTCCCTCTCTCCGCACGACAAGCTGGTCCTGGCACCCCTGCAGCCCAGCGCGGTGCTCTATGCCCTGTCCGGCGCCCCGCCACCCACCACCATCAAGCAGGAGCCGGCAGAGACGGGCTACTCCTTCCCCTCCGGGATGCACCTGGACCAGAGCGGGCAGCTGAGTCTGGGCCCCGAGGGGCTCCCGGGCTCGGCTCTCAGCAGCACATACTCCGTCCCCTCCTCGGTGCTCGGATCCCTGCACCCCCTGAACTCCGTCACTGCGGCTAGCCTCACGTCACCGCCCTCCAGCCAGGCCACCGCCGTCAGCGCGGCGAGCTGCTCGGGGCCGGAGCCGTCCGGCGGAGTGAGTTACACCACGCTGACGGTGACGGCCGCCCCTGGGACACAGACTGCCGGGACGCACCACCACGCGCTGGGGCTGGGTGGGGGTGGCGGCGTGATCTCTGACTACCGAGGCCAGCACACCCCCCACCCGCTGGCACCCAGCCTGAAGGGAAACTTCCTCTCCATCGTGGACAGTAAGGCCGGGTCCCTGCTGCTGGACGCCAAGCCGGTCAGCGACATGGTGCGGGCGATGTGTGGAGAGATGGACAGGGAGGACAAGGAGCTGGCCAAACTTCAGACCGTGCAGATGGAAGAGGACATCAGTGACCTTTAGCCCCTGTGATCTCGGCACTGCGGACAGGCCGCCGGTAGtgtggtatttttttattttggttatgtctgttatttttgttaaatttttgTTTAAGTGTTAAATTATTTGCCTGTGTATCCCACTGTGTATAAACCGTTGTGACCGGGGACTGTGATCTCCACGAGGACAAGCCCGCCCGACGTGCCACGAGCAGAAGAGCCACCTTTTAACCTTGTTTTTACcgcagtagtagcagtagtttCCACAGGTTTCCACGCAGGTTTCCACACACATTCAGGCAGCGTGTGAATTGAAATAGACAGACAAATGTCAtccaattcaaattaaatcatttgacTGGTAACCCAATTTAAGGATGAAATTCAGACTGGGGTTATTCAACACTATTGAGTTAGTCAGTTTATTTCCCACTGAGTTTGTACTGAAACCCTACTGAAGAGCGGGCGTTGGCGGGTACCTGCAGTGGGAGATGTCTGCCCCGGTGAGACTGGCGCTGTCAGCTAGGTCTGGGCCAGGATGGGCCGCTGCTGTCCTCTGACTGTGTCCAAAAACAACAGGGCAGGAGCTTATCCACAAAGAATCCCTGTCAAAACACGATGGAAGTAATTGTAGTGAAATGTAATCTGCACTACATCAAGCATTGCAGTGTCGATAGAAAAACGATTTGCCAAGAGACCCCCTGACCTGTATGCAAGCATTACATACTCATACTTTGCTGCAGGCGTGGGTTCAGTGGGAGTCGCTGACTGTTACTCACAACACAACTGCTACGGTGCTCGGGCACCTCGtgaaattatttcattataaagGAGACTACAAAGAGATTTGTAGCACTTAAATGTGCCTTTGAAATGTGCAGAGCTGTCCCTGGCTGACCTGCACCCCCCCACGCGcgcacacacgtgcacacacacacacacttcgaATGTAACTTGGCAGGACTGTGGACTGTGGACTTTAGCGGCTTGTTTGGGCAGCAGTTGCTCTATGACAGTGTTTCCCAAACCTTCAGGACTCAAGGCACAAATAATTCACTTCACAATTTCGCCAACCCAACCTGCCCCCTCTCCCCTTTCATAAACTTGAAATTAATTGTCCAAAACGTCCGGTGGCGCCGATGTGCCGTGACACCCTGGTGGATAATCACTGCTCTACCGGATCTGCATTCTccccatttttaaaatcttttttccGCTGACGTCTCAGCAAGTtgttcatttgtgttttctacACAGTCCAGTACAAGCACATGTAAATAAGAGGCCAGGTGTGCGTGTccgtttgtgtgtgttctgcagGGAAGGGAAATCTCTGTTACTCTTTGCATGGTGAGCCGAGGCGGTACGTCCTGGATATATGTGCCTTAAAtacttgtctgtctgtttttcagaAGATCGTACAATCTTGGGGGTGTGGAACACTAAGCATGTGACACTTTTGTGTGCTCAATTGGTCATACCAAAGGCAAGCGATGTacggataataataataataataataataacaataggaTTTTTAAGCTTgaattgtctttgtttgtttgtattctgaAATGATGTGaacttatttttctaaacacTATACCCCATTAAAActcta

Function

GO: NA

KEGG:

id description
K15615 SIX4; homeobox protein SIX4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190227 lncRNA downstream 2837 18449544 ~ 18522790 (-) True G151122
TU190224 lncRNA downstream 72427 18437283 ~ 18453200 (-) True G151119
TU190156 lncRNA downstream 151530 18373798 ~ 18374097 (-) True G151071
TU190137 lncRNA downstream 217922 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 424731 18099578 ~ 18100896 (-) True G150965
TU190259 lncRNA upstream 49567 18583408 ~ 18584113 (-) True G151150
TU190279 lncRNA upstream 111028 18644869 ~ 18646177 (-) True G151167
TU190327 lncRNA upstream 257534 18791375 ~ 18824668 (-) True G151198
TU190356 lncRNA upstream 322459 18856300 ~ 18856497 (-) True G151218
TU190486 lncRNA upstream 455234 18989075 ~ 18992844 (-) True G151291
AMCG00000574 mRNA downstream 10259 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000554 mRNA downstream 100214 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000560 mRNA downstream 135959 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000556 mRNA downstream 163741 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000557 mRNA downstream 177643 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000576 mRNA upstream 32524 18566365 ~ 18569134 (-) True AMCG00000576
AMCG00000582 mRNA upstream 68044 18601885 ~ 18602337 (-) True AMCG00000582
AMCG00000570 mRNA upstream 214209 18748050 ~ 18755308 (-) True AMCG00000570
AMCG00000589 mRNA upstream 241141 18774982 ~ 18804311 (-) True AMCG00000589
AMCG00000588 mRNA upstream 291060 18824901 ~ 18831169 (-) True AMCG00000588
TU190180 other downstream 109786 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 111069 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 112162 18412840 ~ 18413465 (-) True G151088
TU190177 other downstream 113102 18411488 ~ 18412525 (-) True G151087
TU189969 other downstream 515777 18007096 ~ 18009850 (-) False AMCG00000539
TU190562 other upstream 800136 19333977 ~ 19336732 (-) False AMCG00000599
TU190711 other upstream 1110109 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 2098248 20632089 ~ 20634946 (-) True G151593
TU190947 other upstream 2212830 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 2392908 20926749 ~ 20935429 (-) True AMCG00000653

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_08464015_08470633.mRNA True 2228 mRNA 0.53 4 CI01000012 8464015 ~ 8470764 (+)