RNA id: AMCG00000576


Basic Information

Item Value
RNA id AMCG00000576
length 2008
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00000576
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18566365 ~ 18569134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGAGGCGCTTCTCCCGGCGCAGGACAATGCCGTCACACGCCGCGCCGCGCATGGCTCCGGAGAGGAGCGGTGTCTGCTCCGAGTCCTGACGTCTGTGATCACAGAGTCCTGCGGTGTGAAAGCCAGCCCGGCGGCCCGGCCGTGCTCCACTCGGCCCCCCAGGTTCCTGGCAGCCACAGTGCCACTCTGTCTCTCCCGGCACGTCGGTGTCCGATCGCTGCAAGCCATGCCGGAGGAGCAGGCTGAGCCGGAGCCCGGGCTGTACGTGCCCCCGCCGGAGGTGCGAGGCATGACCACTCTGGACCGGGCGGCATTCCGACGCACGGTGACCGTGCCGGCCCTCTGCGTACGCAAGGAGCTCATCAACACGCTGATGAAAACCCTGAAGAGGGTGGGCCTGCAGCGGCCGGGGCTGAAGCGCGTGGTGGAGGCGCCCGACGGAGACCACCGGCTGGTGCTGCTGGACCCCGGCACCGTGTCCTCCCCGGCCTGCTTCAACGAGGTGGAGATGGCCGCTCTGGAGAGGTTCCAGGTCAGCGTGGAGTTGCAGAGCCACGAGCTGCAGCTGAGCTACGACAACCTGAAGAGTGAGGAGATTCTGCGCGCCGTGCTGCCCCTCGGACAGGACGTCACCTCGGGCTTCAGCCGCGTCGGACACATCGCTCACATGAACCTGCGTGACCACCAGCTGCCCTACAAGGGCCTCATCGGACAGGTCATCATGGACAAGAACCCGGGGGTGACCTGCGTTGTCAACAAGACCAACACCATCGACTCCACCTACCGCAACTTCCAGATGGAGGTGCTGGCTGGAGACGGCAACATGGTGGCCAAGGTGCGTGAGAACAGCGTGACGTACGAGTTCGACTTCTCCCGGGTGTACTGGAACCCGCGGCTGAGCACGGAGCACGAGCGCGTGGTGTCGCTGCTGCGGCCGGGCGACGCCGTGTTCGATGTGTTTGCGGGGGTGGGGCCCTTTGCCGTGCCGGCCGCCCGGCGTGGCTGCAGCGTCTTCGCAAACGACCTGAACCCCGAGTCGCACCGCTGGCTGCTGCACAACTGCAAGATCAACAAGGCCGAGCGCAACGTGCGCGTCTTCAACATGGACGGCCGGGACTTCATCCGCGGGCCGCTGCGGGAGGAGCTGCCCCGGCTGCTGCGGCAGAGCGGGAGCGCCGTGCACGTGGTCATGAACCTGCCCGCCCTGGCCCTCGAGTTCCTGGACGCCTTCCGGGGCCTCCTGCGGCCGGGGGAGGGGCTGGACTCGGAGGACCTCGCTATGCCCCGGGTCCACTGCTACGGCTTCTCCAAACATGAGGAGCCACAGCGGGACGTGACGGCACGGGCGGAGGCCAGCCTGGGGGCGGCGCTGGAGGGATGCTGCTCCGTCCACCTGGTGCGCAACGTGGCCCCCAACAAGGAGATGATGTGTATCAGCTTTGCCCTGCCCCGGGAGGTCCTCTTCCAGGCCCCCAGCCCCCAGCCAGgGACTCCAGCATCTGACTCCCCAGAACGGGCTCTCGCGCCCCCCAAAGACGCCGAGGAGCCGGCCCCGAAGCGCCCGCGGTGCGAGGAACAGTCCTCCTAGACACGGAGCGCCGCCTTCACACCACAGAGACAGAGCCCTGATCAGACTgacttcatttcatttcatttctattGTCAAAGGGATCCTTCAGTTGACAGCTCAGGACAGAATGAAGCGTCCAGCGAGCGagtctttgtcttttgtttttaatcattttcattttattattttttaataaactgtcCCTGTGTTTCAATAAACTACTgtgctgttaaaataaaaggttCACAGACTTCAAAGCTGGCCAGCAGTCAGAGAGGTCCCTGTGCCTGTCCACCGATCTGGACGTCGCTGcccttgtgtctctctcttcctgcgACACAGAGCTTCACACGGTGCATTTAGACAGAGATACTAAAACCTCCTGTTCTCCTCCTGATACCGAATCACACTACAGCCCCCCGGgagcccctgc

Function

GO: NA

KEGG:

id description
K15429 TRM5, TRMT5; tRNA (guanine37-N1)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190240 lncRNA downstream 650 18494649 ~ 18565715 (-) True G151133
TU190227 lncRNA downstream 43575 18449544 ~ 18522790 (-) True G151122
TU190224 lncRNA downstream 113165 18437283 ~ 18453200 (-) True G151119
TU190156 lncRNA downstream 192268 18373798 ~ 18374097 (-) True G151071
TU190137 lncRNA downstream 258660 18305085 ~ 18307705 (-) False AMCG00000559
TU190259 lncRNA upstream 14274 18583408 ~ 18584113 (-) True G151150
TU190279 lncRNA upstream 75735 18644869 ~ 18646177 (-) True G151167
TU190327 lncRNA upstream 222241 18791375 ~ 18824668 (-) True G151198
TU190356 lncRNA upstream 287166 18856300 ~ 18856497 (-) True G151218
TU190486 lncRNA upstream 419941 18989075 ~ 18992844 (-) True G151291
AMCG00000575 mRNA downstream 32524 18525627 ~ 18533841 (-) True AMCG00000575
AMCG00000574 mRNA downstream 50997 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000554 mRNA downstream 140952 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000560 mRNA downstream 176697 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000556 mRNA downstream 204479 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000582 mRNA upstream 32751 18601885 ~ 18602337 (-) True AMCG00000582
AMCG00000570 mRNA upstream 178916 18748050 ~ 18755308 (-) True AMCG00000570
AMCG00000589 mRNA upstream 205848 18774982 ~ 18804311 (-) True AMCG00000589
AMCG00000588 mRNA upstream 255767 18824901 ~ 18831169 (-) True AMCG00000588
AMCG00000590 mRNA upstream 264567 18833701 ~ 18853270 (-) True AMCG00000590
TU190180 other downstream 150524 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 151807 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 152900 18412840 ~ 18413465 (-) True G151088
TU190177 other downstream 153840 18411488 ~ 18412525 (-) True G151087
TU189969 other downstream 556515 18007096 ~ 18009850 (-) False AMCG00000539
TU190562 other upstream 764843 19333977 ~ 19336732 (-) False AMCG00000599
TU190711 other upstream 1074816 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 2062955 20632089 ~ 20634946 (-) True G151593
TU190947 other upstream 2177537 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 2357615 20926749 ~ 20935429 (-) True AMCG00000653

Expression Profile