RNA id: AMCG00000613


Basic Information

Item Value
RNA id AMCG00000613
length 5298
RNA type mRNA
GC content 0.56
exon number 31
gene id AMCG00000613
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19503699 ~ 19531054 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGCCTATAACTCAGTCCAGGCCACGGGCTCCCAAGACAACTGCTGCCAAAGAACCGGGACCCACCGCGGTCAAGAGTCAGCCACACAGGTCCAGTCCGAGACCGCCATTGGCGAGGGCCCCCCAGACACCGGGCTCAGAGAGCAGTGAGGACAGCGAGGACAGCGACGCCTCTCACTCCTCCGACACCTCGGACGAGAGTGAGCGCGGGAAGCTCAAGAGGAGGCTGGGAAAGAAGGGAGGAGAGGTGAGGACAGAGAGCCGGCGTCCCACCCCGCTTCTGCAGTCGACACCCACTGACGGAGGACAGCCTGGGAGCAGTGCAGGGTCCAGCCGCACGCGCGGGGTGAGGTCTGCCGCCGAGCTGCTGGAGGAAGCCGAGGACATAGCTCGGACAGATCCATCAATACACGAGAGGCGCGTCCAGCAGAGACAGCCGGAAGGGGCCACGCTAGCGGTGAAGACGCTGATGAGGGGGAGAGCCAGGACGGTGGATGAGATCATCGCCTCCCTGCAGGCTGGGAGCGCCACAGACTCCCTCTCGGCGTCAGACCTGATGATCAAAGAGCTCACAGAGAGAGTGCTCGGCCATGAAACCGAGGGGGAAATAAGTGATTTAAAGGATGATCCAACAAGCGGTTCCAACGAAGGACCCAAAGAGAGTGCGGCAGAGACTTTGAAAAGTGAAGCTGAAGATACACAATCAGGGCCTCCTCCGGGGATGTCAACCAGAGATGTCCCTCTACCACACGTGTCGATCAAAGTGGCTGAGAAGAAGGGCTCAGCTGGGCTCTCAGCGGATCCACAGCCGTCCTCTGATGCCCCCTTGTCTTGTGAAGTGGTTTCTTCACAGACTGTGTCGCTGAAAGACTCTGTGTTGGGCTGTGCACAAGACACGGCCCTGGAACGTCCTGAACAGgtGACATACTCTGATATAATCAGTGTGAAAGGAGTGCCAGTTACAACTGCTCGGGGTTTACAGAAGAGCCAGCCAGTGCAACAAGTTTCCTTCCTGGCAACGTGGACCCCCAAAACCAATGTTCAGGAGTATAAGACTATCCATCACCTGTGCACGGCCCCCTTGACCCAAGTGCTGCCCCTGGATTTACAATCGACGTCTCGGCTCTGCCACTCTCCCAGCCGAAGGCCCGCCTCTCTCCACATCCTGCCACAGGGAGCAGCATCGAGCCGCCGTACAGACCCGGCTGAGACGCACTGGGTTGTGTCTGAAGGAGAGCGTTGTGCTCCTGTGTATCAGGCAGAGCAGAAGGACGGTGTCGTCCTCCTGCCAACGCACAACGACCTGACCGAGTGGCAGAAGATTGCGGAGTACTACGTGGAGAGGCCGAGGATGGTGCTTTTAGGGCGACAGGCTTCTATGTACACGAACGAATCAAAGCTGTTCTGGAACCCCGCGCCTCCGAAGTTCACCTTCACCCCGTCTTTTGTGCAAGACAAGTTGTTTCCAAAGTACCAGGGAAGTGGAAATGAAATGCCAAACGTGCTGCCAGACCTCTATTGTGACTTGCAAGATTTAAACGAGTCAGACCAAGACCTTTTggatgtgcaaaataaaaccgTAGAGgcAGTCATCTGGAGGTCCCAGTCAGCCCCTGACCTCTCTGTGCTGCCAGACTCAGGTCTAAGAGTCCCTGCCGATTTCAAAGCGATCAAGAAGGAGGTGGACGTCGTGATTAAGCAGCTATCACAGAGTAAGACGGCGGCCGTGTCAGAAGCCCGCAGTCCCACGATCCCCGTCTCAAAGGAAGCGGAGTCGATCCCGGCCGATTTGCCAGAACCCGTCGGTAGCCAAAGCCAACTCATGCAAAGACAGAAGAAGGAAAATGTCTCTCTTTCTGATGTCGCTCGGAAAGCAGGGCAGACTTATATTATACACCCCAGGAAGAAaagcacaagaaagaaaaagttgaGCCCAGAAAAGCTGGCTTTTGTAGAAAGGAAACTAAATCAACCACCAAGGACCCTGGCaaggtGTGAGTCCTTGCCCGCGCTCCAGAGAAGGACAGATCCCTCTTTGAGAGTCCCCAAGAAGACGCTCCGGTCTAGAAGGGCCAGCCTCCCTGCACTCCTGGATTTTGAACACTTTGCGGCGGCTCGAGGCGGGATCCCAGAGGATGCCATCCCCAGAGAGTGGGTGAGGGACATCTGGGACAGCTGGTTTGATGAAGTGTTCCCCCCATCTGATGTAGAGACTGGAGCGGACTATCCGAGACCGACGCCGCTGTATCCTGAAAGACGGAGCTCTATTGATACGCGACACACAGACGCCGAGGGTCCAGTCCCGGACGAAGTGGACCTCTCCTGTACTCTCGGCGCTGAAGTCACTGCCTCCGATTTGCAGAGTGAGGTCGACAAGCTCACACAGGTTATAGCTGCACAGCGAGGGTCAGGGGCTTTCGATTTGTGCCGCAGAGGAGCCCTGCTTAAAAAACTTGGCCATCTTACCCTGGCGCTGGAAGATCTGAATACAGTGATTGCCAGAGAGCCACTCTTGCTGGATGCATATTGGCACAGACATAGTATTcatctgctgaagagaaacctCGGGAAAGCGTTGGAAGACCTGAATTTCATAATCAAGCACAACAGAAACCATGCAGACGCCTTTAGGTCCAAAGCGGAGATCTACCGAGCGCAAGGCGACTCTACGTTGGCCATAATAAATTACACTCAAGCCATCAAGCGCGGGCCGGAAGATGATGAGAACTATTTTCGGAGGGCAGAGATGTATGAGAAAACAAATGAGACTTTACTGGCCATGGAGGATTACGCGATGGCCTTCACGATCAATCCCAGGCGGACCGACGCGCTGATGATCCACGGCCTGCACCATTTCCGCCGCTCCAATTGGACGGTGGCCCTCTCGGACTTCACGGCCTTACTGAAGCAGGAGCCCAGAAATGTGGAAGCGAGGACATACAGAGGGAGAACATACGCCAAGCTGTCCCAGCACAGAGAGGCAATAGAAGATTTATCCGCTGCGATTTATCTGGACCGTAACAACTGGGTCGCCTTCTACCTCAGGGGCTGCTTGCTGAGAAAGGTGCACCCTGAAATGGCCATAAAGGACCTCAGCGCTTCAGTGCTCATCAACGACAGCTTTGAAAACCTCAGCGCCTTCCTGCACCGCGGCGTCCTCTACGCCGAGCAGAGCCGGTGGGCGTCGGCCGTGGGGGACTTCGAGAGGGTGCTGAAGCTCGACAGATGTGTCCCCGTCGCTCATGTGAACCTGGGCCTCGTCTACATGTTGAAAATGGAAAACCATTCCGAAGCGATCCGGAGATTCACCAACGCGCTGAAGGTGGACCCGACTTACATCAGAGCGCACATCTGCCGAGCCCAAGCCTATGCCAAGGTGCGTGATTTACCGAGGGCCCTGAAAGACATAACTCATGCGATTCATCTCCAGCCCAACACACACCATCTGTACATAATGAGAGGCCAGTATTTGTGCGACATGAAGGATTTTGAGCTGGCGAGATTCTGTATCCGATACGCTGCGGAAATGAATAAAGGCTCCTCCCCCATCCAGCAGGCCGCGGTGCAGTCCTTCCTGGGCAACAACGCCAGAGCCATCGCCTGCCTCTCCTCAGCCACCAGGACACGGCCGTCCCCCTCTGCCTTCATCCTGCTGGGGAAGACTCAGATGAAGGCCAGGAAATACACGGACGCCATCGAGAGCTTTGAGAAAGTGCTGACGCCACTGTGCCCCGATCGAGACTGCTGCTCTGCCCCCGACGCCGCTGAGGTTTTCTATTTGACCGGCCTTTGCCATGTGGCCCAGGCCAACCTATTACAGGCGGTGGAAGCCTTCAGCAGCGCAGTGAAGATCAGCCCGGATTCTGCGGACGCGCTTTACCAGCGTGGCCTGTGCCGGATGCATCTTCAACAGTCGAAGTGCGTCCAGGATTTCAACAGGGCTCTGTCGATCAACCCCAACCTCTTCCAGGCGATCCTCAACTGCAACGAAGCCCTGCGGATTCAGCCCCGGAGTGTGAGAGCTTATCTGTACCGGGGGGCGCTGAAGTTCTTCATGAAGatATACAGGTACGCCGTACAAGATCTCACCACAGCCATCGAGATCGACGAGACGTGTTCTCTGGCGTACTATAACAGAGGGGTGTGTTACCAGCAAATGAAGGAGCACGGAAAGGCTTTGAAGGACTACGGACGCGTCCAGCATCTCGGAAGCAGAAAAGAAGTCGAGCTCAAAGTGCTGATTAATCGAGGGCTTCTGTACGTGGAGCTCAATGATCCTAATAATGCACTTCAGGATTTTAAAGCCGCCTCAAGAAAGAGCCCAGAAGATGCCTCCAATTTCCATGCGGTGGGAGTCCTTCACCACCGACTTGGTCACCTGGAAGAAGCCACGGCTGCATTCACCCAGGCCCTGAGACTCCGGCCCTTCTTCCTCGAGGCCTACGTGGGCCGAGGCAACGTTTACATGGACTACGGACACCAAGACGCCACCAAACAGGCGCAGAGAGACTTCCTCACGGCGCTGCACCTAAACCCCACGTGTGCCAAGGCCAGACTCGGCCTGGCGTTCAACTTCCAGGTGTTGGGCCGGTTCAGCAAAGCCTGGAATCAGTTGACCATCGCCATCGAAGTCGACCCGTCCTGCTGGGCCGCCTACGAAGGCCGATCCGTCATCAACCTACAGATGGGCCACACCTTTTCGGCTTTCCAAGACATTAACGCCGCCTTGAAGTACAATCCCCTTTCTGATCAGCTGATCACAAACCGCGGCGTCATCAACCAATTCATGGGAGACAAAGTCAACGCAATGAAAGACTATCAGGCGGCCATAGCCCACAACCCGCAGTACGCACTGGCTTATTTCAATGCTGCCAACCTGTACTTTTACAACAGGCAGTTCGAACAGGCCAGTGAGTACTATAGTAAAGCATTCGATCTGGACCCCAGTGACGACTCTGCCGCGCTCAACCGGGCCATCGCCAGGACGTTGCTGGGAAATGTGCCGGAAGCCTTGAGGGACTTCAGCGCCGCCTGCAAGCTCAACCCATTCTCCACTCACGTGTATTTCAACAGGGCTAACCTGTACATCTCTGTGAAGAAATACAAGTCTGCGGAGAAAGACCTCTCCCAGGCTCTGCTCCTGCAGCCCAACGACGCCCTGGTGTATAAACTGCGAGCCGACGTGCGGGGCAAGCTGGGATCCACGGAGCTGGCCGTTTCGGATTACAAGAAAGCCGTGCGTCTCGAGGAGGCAGCCCAAGAGCTGTGCAACCCGCGTCTGCAGACGATCCGCTGA

Function

GO: NA

KEGG:

id description
K24929 TTC6; tetratricopeptide repeat protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190641 lncRNA downstream 20392 19481328 ~ 19483307 (-) True G151416
TU190615 lncRNA downstream 103606 19398722 ~ 19400093 (-) True G151393
TU190486 lncRNA downstream 510855 18989075 ~ 18992844 (-) True G151291
TU190356 lncRNA downstream 647202 18856300 ~ 18856497 (-) True G151218
TU190327 lncRNA downstream 679031 18791375 ~ 18824668 (-) True G151198
TU190682 lncRNA upstream 81196 19612250 ~ 19619068 (-) True G151446
TU190681 lncRNA upstream 83389 19614443 ~ 19614902 (-) False G151446
TU190684 lncRNA upstream 90083 19621137 ~ 19623387 (-) True G151447
TU190685 lncRNA upstream 90083 19621137 ~ 19623387 (-) False G151447
TU190976 lncRNA upstream 1280486 20811540 ~ 20812254 (-) True G151678
AMCG00000611 mRNA downstream 16657 19485939 ~ 19487042 (-) True AMCG00000611
AMCG00000607 mRNA downstream 121568 19378217 ~ 19382131 (-) True AMCG00000607
AMCG00000608 mRNA downstream 126078 19361226 ~ 19377621 (-) True AMCG00000608
AMCG00000609 mRNA downstream 145484 19354563 ~ 19358215 (-) True AMCG00000609
AMCG00000603 mRNA downstream 152431 19342882 ~ 19351268 (-) True AMCG00000603
AMCG00000619 mRNA upstream 21307 19552361 ~ 19593549 (-) True AMCG00000619
AMCG00000618 mRNA upstream 112810 19643864 ~ 19646607 (-) True AMCG00000618
AMCG00000615 mRNA upstream 351410 19882464 ~ 19887052 (-) True AMCG00000615
AMCG00000625 mRNA upstream 439424 19970478 ~ 19971836 (-) True AMCG00000625
AMCG00000624 mRNA upstream 441317 19972371 ~ 19974873 (-) True AMCG00000624
TU190562 other downstream 166967 19333977 ~ 19336732 (-) False AMCG00000599
TU190180 other downstream 1087858 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 1089141 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 1090234 18412840 ~ 18413465 (-) True G151088
TU190177 other downstream 1091174 18411488 ~ 18412525 (-) True G151087
TU190711 other upstream 112896 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 1101035 20632089 ~ 20634946 (-) True G151593
TU190947 other upstream 1215617 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 1395695 20926749 ~ 20935429 (-) True AMCG00000653
TU191083 other upstream 1907213 21438267 ~ 21457795 (-) True G151771

Expression Profile