RNA id: TU190650


Basic Information

Item Value
RNA id TU190650
length 247
lncRNA type sense_over
GC content 0.52
exon number 3
gene id AMCG00000613
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19503699 ~ 19531054 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGACTTCACGGCCTTACTGAAGCAGGAGCCCAGAAATGTGGAAGCGAGGACATACAGAGGGAGAACATACGCCAAGCTGTCCCAGCACAGAGAGGCAATAGAAGATTTATCCGCTGCGATTTATCTGGACCGTAACAACTGGGTCGCCTTCTACCTCAGGGGCTGCTTGCTGAGAAAGGTGCACCCTGAAATGGCCATAAAGGACCTCAGCGCTTCAGTGCTCATCAACGACAGCTTTGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190641 lncRNA downstream 35239 19481328 ~ 19483307 (-) True G151416
TU190615 lncRNA downstream 118453 19398722 ~ 19400093 (-) True G151393
TU190486 lncRNA downstream 525702 18989075 ~ 18992844 (-) True G151291
TU190356 lncRNA downstream 662049 18856300 ~ 18856497 (-) True G151218
TU190327 lncRNA downstream 693878 18791375 ~ 18824668 (-) True G151198
TU190651 lncRNA upstream 10935 19530748 ~ 19530962 (-) False AMCG00000613
TU190682 lncRNA upstream 92437 19612250 ~ 19619068 (-) True G151446
TU190681 lncRNA upstream 94630 19614443 ~ 19614902 (-) False G151446
TU190684 lncRNA upstream 101324 19621137 ~ 19623387 (-) True G151447
TU190685 lncRNA upstream 101324 19621137 ~ 19623387 (-) False G151447
AMCG00000611 mRNA downstream 31504 19485939 ~ 19487042 (-) True AMCG00000611
AMCG00000607 mRNA downstream 136415 19378217 ~ 19382131 (-) True AMCG00000607
AMCG00000608 mRNA downstream 140925 19361226 ~ 19377621 (-) True AMCG00000608
AMCG00000609 mRNA downstream 160331 19354563 ~ 19358215 (-) True AMCG00000609
AMCG00000603 mRNA downstream 167278 19342882 ~ 19351268 (-) True AMCG00000603
AMCG00000619 mRNA upstream 32548 19552361 ~ 19593549 (-) True AMCG00000619
AMCG00000618 mRNA upstream 124051 19643864 ~ 19646607 (-) True AMCG00000618
AMCG00000615 mRNA upstream 362651 19882464 ~ 19887052 (-) True AMCG00000615
AMCG00000625 mRNA upstream 450665 19970478 ~ 19971836 (-) True AMCG00000625
AMCG00000624 mRNA upstream 452558 19972371 ~ 19974873 (-) True AMCG00000624
TU190562 other downstream 181814 19333977 ~ 19336732 (-) False AMCG00000599
TU190180 other downstream 1102705 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 1103988 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 1105081 18412840 ~ 18413465 (-) True G151088
TU190177 other downstream 1106021 18411488 ~ 18412525 (-) True G151087
TU190711 other upstream 124137 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 1112276 20632089 ~ 20634946 (-) True G151593
TU190947 other upstream 1226858 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 1406936 20926749 ~ 20935429 (-) True AMCG00000653
TU191083 other upstream 1918454 21438267 ~ 21457795 (-) True G151771

Expression Profile