RNA id: TU190651


Basic Information

Item Value
RNA id TU190651
length 215
lncRNA type sense_over
GC content 0.66
exon number 1
gene id AMCG00000613
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19503699 ~ 19531054 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCAGTCCGAGACCGCCATTGGCGAGGGCCCCCCAGACACCGGGCTCAGAGAGCAGTGAGGACAGCGAGGACAGCGACGCCTCTCACTCCTCCGACACCTCGGACGAGAGTGAGCGCGGGAAGCTCAAGAGGAGGCTGGGAAAGAAGGGAGGAGAGGTGAGGACAGAGAGCCGGCGTCCCACCCCGCTTCTGCAGTCGACACCCACTGACGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190650 lncRNA downstream 10935 19518546 ~ 19519813 (-) False AMCG00000613
TU190641 lncRNA downstream 47441 19481328 ~ 19483307 (-) True G151416
TU190615 lncRNA downstream 130655 19398722 ~ 19400093 (-) True G151393
TU190486 lncRNA downstream 537904 18989075 ~ 18992844 (-) True G151291
TU190356 lncRNA downstream 674251 18856300 ~ 18856497 (-) True G151218
TU190682 lncRNA upstream 81288 19612250 ~ 19619068 (-) True G151446
TU190681 lncRNA upstream 83481 19614443 ~ 19614902 (-) False G151446
TU190684 lncRNA upstream 90175 19621137 ~ 19623387 (-) True G151447
TU190685 lncRNA upstream 90175 19621137 ~ 19623387 (-) False G151447
TU190976 lncRNA upstream 1280578 20811540 ~ 20812254 (-) True G151678
AMCG00000611 mRNA downstream 43706 19485939 ~ 19487042 (-) True AMCG00000611
AMCG00000607 mRNA downstream 148617 19378217 ~ 19382131 (-) True AMCG00000607
AMCG00000608 mRNA downstream 153127 19361226 ~ 19377621 (-) True AMCG00000608
AMCG00000609 mRNA downstream 172533 19354563 ~ 19358215 (-) True AMCG00000609
AMCG00000603 mRNA downstream 179480 19342882 ~ 19351268 (-) True AMCG00000603
AMCG00000619 mRNA upstream 21399 19552361 ~ 19593549 (-) True AMCG00000619
AMCG00000618 mRNA upstream 112902 19643864 ~ 19646607 (-) True AMCG00000618
AMCG00000615 mRNA upstream 351502 19882464 ~ 19887052 (-) True AMCG00000615
AMCG00000625 mRNA upstream 439516 19970478 ~ 19971836 (-) True AMCG00000625
AMCG00000624 mRNA upstream 441409 19972371 ~ 19974873 (-) True AMCG00000624
TU190562 other downstream 194016 19333977 ~ 19336732 (-) False AMCG00000599
TU190180 other downstream 1114907 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 1116190 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 1117283 18412840 ~ 18413465 (-) True G151088
TU190177 other downstream 1118223 18411488 ~ 18412525 (-) True G151087
TU190711 other upstream 112988 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 1101127 20632089 ~ 20634946 (-) True G151593
TU190947 other upstream 1215709 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 1395787 20926749 ~ 20935429 (-) True AMCG00000653
TU191083 other upstream 1907305 21438267 ~ 21457795 (-) True G151771

Expression Profile