RNA id: TU190947


Basic Information

Item Value
RNA id TU190947
length 321
RNA type TUCP
GC content 0.66
exon number 2
gene id AMCG00000635
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20744379 ~ 20752657 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATGGAGGAGGTGAAGTCCGACCTGCACGAGCGCTACAAGGTGCTGCCCGGCCTGAACTCGCGCATCTCCGAGATGGAGGCCCGGTACGAGGAGCTGCGGGAGAAGACCAAGCAGATGGAGCAGAAGATCTGCAGCATTCAGAAGCTGGCCAGCTCCCACTCGGAGAAACTGCTGGAGGTGGAGATGGAGCTGCGGGCACTGCGGGCAGCACGGGACGAGCTGGAGACGCTGCGCTGCACTGTGGAGACCATCCGCACACGCGTGTCGGTGCTGGAGGGGGGCCGGGGCACAGCCGGCGCCGGGGGACACACTCTAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190684 lncRNA downstream 1123284 19621137 ~ 19623387 (-) True G151447
TU190685 lncRNA downstream 1123284 19621137 ~ 19623387 (-) False G151447
TU190682 lncRNA downstream 1127603 19612250 ~ 19619068 (-) True G151446
TU190681 lncRNA downstream 1131769 19614443 ~ 19614902 (-) False G151446
TU190651 lncRNA downstream 1215709 19530748 ~ 19530962 (-) False AMCG00000613
TU190976 lncRNA upstream 64219 20811540 ~ 20812254 (-) True G151678
TU191027 lncRNA upstream 167120 20914441 ~ 20914680 (-) True G151725
TU191028 lncRNA upstream 167920 20915241 ~ 20916217 (-) True G151726
TU191029 lncRNA upstream 168909 20916230 ~ 20917085 (-) True G151727
TU191045 lncRNA upstream 232752 20980073 ~ 20980345 (-) True G151739
AMCG00000636 mRNA downstream 5607 20734583 ~ 20741064 (-) True AMCG00000636
AMCG00000632 mRNA downstream 78658 20666634 ~ 20668013 (-) True AMCG00000632
AMCG00000631 mRNA downstream 119113 20620472 ~ 20627558 (-) True AMCG00000631
AMCG00000630 mRNA downstream 128945 20601669 ~ 20617726 (-) True AMCG00000630
AMCG00000627 mRNA downstream 197092 20545857 ~ 20549579 (-) True AMCG00000627
AMCG00000644 mRNA upstream 22760 20770081 ~ 20791578 (-) True AMCG00000644
AMCG00000645 mRNA upstream 64959 20812280 ~ 20835927 (-) True AMCG00000645
AMCG00000647 mRNA upstream 89063 20836384 ~ 20837506 (-) True AMCG00000647
AMCG00000646 mRNA upstream 91884 20839205 ~ 20844566 (-) True AMCG00000646
AMCG00000652 mRNA upstream 170341 20917662 ~ 20920464 (-) True AMCG00000652
TU190879 other downstream 111725 20632089 ~ 20634946 (-) True G151593
TU190711 other downstream 1100196 19643950 ~ 19646475 (-) False AMCG00000618
TU190562 other downstream 1409939 19333977 ~ 19336732 (-) False AMCG00000599
TU190180 other downstream 2330830 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 2332113 18414055 ~ 18414558 (-) True G151089
TU191039 other upstream 179428 20926749 ~ 20935429 (-) True AMCG00000653
TU191083 other upstream 690946 21438267 ~ 21457795 (-) True G151771

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023998 True 2465 mRNA 0.50 11 NC_007128.7 29227502 ~ 29249258 (-)