RNA id: AMCG00000646


Basic Information

Item Value
RNA id AMCG00000646
length 3621
RNA type mRNA
GC content 0.69
exon number 7
gene id AMCG00000646
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20839205 ~ 20844566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGACACGGAGGATGAGAGCAACATGACAGCAGGCGCCGCGGAGGGGCAGAGCGACGGCGGGGCTGCCGGGCACAGCGAGGCCGTGGCGCCGCACGCCGGGGGTCGGGTGGTGTCCCTCGGGGGGCTGGGCGAGCGGGACGGCAGCGGCGGCCACCCGGTGGAGCTGTGCGCCCAAGAGTTGACGGGGTCCCCGGGCATCGCCGAGTACCTGCACGGGGGGCGAGAGGCGGCGGTGCAGGGCGAGAGCTGCCAGGTGGTGGGCTCCTTCACCAGCGCCGAGGGCATCCTCCATGAGGGCAACATCATCACCACGTCCTTCGTGGAGGCGCCCGGCGGGGAGAGCGTGGCGGACTTCGCGGCCGTGGCCGGGGAGCTGGTGGATGGCATGAACCCGGCGACCAGCACCATCATCTACGTGCAGCCGGACGGCAGCTTCGTGGAGGGCACCGGGCTGACCGCCGAGGAGCAGCGGCAGCTGGTGGAGCAGCTGGCCAAGCAGCAGCTGGTGGAGGTGACGGAGAACGAGGCGGCCCGCATCTTCGAGACCCGGCCACAGCATCCTCCCCCGGCGGCCCCGGCTCACTTCATCCACCACAGCACGACCCTGGCGCCGGAGGAGCTACAGCAGGTGATCGAGCAGGTGGCCAAGGCGCAGCAGTCCGCCGGGGCCGCCGTGGAGCAGCACGGCGTGGTGTCGCTCGTCCAGGCGCAGGGCGCAGGCTCCGAGGCGCAGGTGTCCCTGGACGCGGGCTGCCTGTTCCCGGCCGGCGCGCAGCCCCTGGCCGTCGTGCAGAACGCGTCGCAGCAGCTGCAGCATGTGGCCAAGCAAGTGGCGCTGCAGCAGAACCGGGCGCAGAACGGGACCCGGCTGATCCAGAAGAAGCAGCTGGAGACCATCCGCATCCAGGTGAAGAACCTCTCGGCCCCGGAGCCCCCAGAGCGGCCCATGCCACCCCTTGCCATGTTCCAGCAGAGGAGTGTCTCGGCGGTGAGCCAGTCCACCACCCGGGTCAGCGTATCGCCGGCACTCAGCATCGGCAGCCCCCAGATCATCCGTATCCAGCCCTTCCCCGGAACTGGGGGGCCGCAGCAAtcgcagcaacagcagcagttCTTCTTGCACAGCGGCTCTGGCGAGCCCCCCATCCAGCTGCTGGTGCAGAGGCGGGTGCCAACGGCGGAGGGCGCCTCCACCGCACCACGTAGGCTGCCCGCCAAGCCGTCGCTGAACGGGAGACCGGGGAAGGGCGGGGGGGTGGCCGTGGTGTCTGGCGCCCCAGGCTCGGGGTCTGTCTCGGGGGCGCTGGACCGGAAGGAGAGGCAGAAGGAGAAGGAGCGTGAGAAGAAGCCACAGAAGATCAAGACGCGCTCGGGTCGGATCTCCCGCCCGCCCAAGTACAAGGTCAAGGACTACAAGTTCATCAAGAGGGAGGACCTGGCCGACGGCCACCCCTCTGACTCGGACGACTACTCTGAGATCAgcgtggaggaggaggaggaggaggaggacagagtGGCCGGGGGGCCGGGGGAGCGCGGTGGCGACACGGGGGCCATTAACTTTAACCTCAACCCCAAGGCCTTCAAGTGCGAGACGTGCGAGAAGGCCTACATCGGGCGGGGGGGCCTGTCCAGACACTACAGGCTCAATCCCGCACACGGAGAGAAGGGGCCCGGCTCGGGGGGCCCCGTAAACCAGGAGGTCAGGGGCCCTGCTGTGGGGTCCGGAGCAGTTCTCTCGGCAGGGGGCACCACCACGGTCACGGCCCCGCAGACAGATGGACGGGCCGCGCTGACGCCGGTCACGGCACCACAGACCGCAGATAGCGAGAGGCCCAAGGCGGGGCCCGGTGTTACGGCAGAGACTGTTATCGCAACAGCCACAGAATCGGCACCGTTGTCAGGACCAGAAGACACGAAGGTTGACTCCGCAGTCCCTCCTGCTCCCTCGGTCCCCGCACTGCCCACCTGCGCCGGTCCGGGCCGGCCCAGAGGACCCGGTCGACCCAAGGGCCCCGGCAGGCCAGGACGCCCCAAACTGTCGGGACGTCCAGCGAGAAGAGCCAAGCCGGGGCGGCCCCCGAAGTACCTGGGCGGGGTGACCACAGAGCAGCAGATCCAGAGGAGGAGAGCGCGGTTGAAAGAGATCCTGCAGCAGTGCGACAATGAGGAGCTGATGGAGATGGCGCTTCCCCGGCTGGCCAAGGTCATGACCGTGTGGGAGTTCCTGCTGATGAAGGTGGAGAAGGGCCGCCCCTCCAGGCCCCACTTCGCAGACGTGTACCGCGAGTTCGAGCAGCTGCACGGCCAGGTGAAGAAGATGGCACAGGACCACTTCGGCTCGGCACACGGCGTTGGGCCCAACGCCGCCCTGGAGATCCGAGACCTGCAGGTGTCCCGGTCTCTGGGCATCGAGGAGCTGGTGAAGAGGAGCCGGGCGGTGCAGGGGGTCTGCAAGGAAAACCACCTTCCAGCCGGCAAGAGACCCCTCACAGACTCCGAGtgtggggggggcagttcACAGCCGCCGGCAAAGAGCCTTCGACTGGAAGACTCATCGGGGGCGACAAACGGTATTTACATCAGCCAGAACGGACTTCAGGGTGTCTCTGGAGAGGAGCCATCGACCGCGGGCAGCGACAGACCAGgacaCGAGCAGCTTCGGCCCGAGGCAGCCGTGGCGGAGGCGGCGGCGCTGGGAGACAAGCTGCTGCAGACAGGTGGTGGTTTTGCCGCACTGGAGCCCGGGGGTGACCCGTCCGGAGTCCTCCTATACCAGCCCTTGGAGGTGGAGGAGCTCCAGGAGGTCACGGAGCCGGGGGAGGCGGGCGGCGCCGGGCCAGTTATGTTCACCAGCCTGGACGCAGACTTCTCTCCTGAGGAGCTGGTGCAGGGGCAGCTGTCGGGCGGGGGCTGCGAGACCACTGTGGTGACACCGGCGGGGGGTGGCGAGGAGGCGCAGCTGGGGCCAGATGGAGAGGAGGAGGCCGGGGCGGATGGAGAGACTGAGGGCGGGGCTCTGCTAGAGGAGATCTCCCAAGGAGAGCGGGGCGGCGCCGAGCCCTCCGAGGTGCTGAATGACTCGGACATCGCCGACCAGATGCAGCAGCTGGAGAACGCTCTGAGCCGAGACGTGGTTCCCCTGGACCACTCCTACCGGACTCACGTGGCCGGGCCCGGCGAGGCTCCGCAGCACGAGGGCGTCTTTGTGGCCGGTGGCACGGAGACGGAGGAGGACAGCCATGCAGCGCAGAGCGAGCTGCAGGTGATGGAGCTGACGGACCTGGCGCAGGACGGGGGGATGGAGACTAACGGCAGCTTGCAGCACCACATCGCCGTGGGCGGCACGGTGGAGTTCCAGCTCTCCGAGGCCAACCAGGAGCTGCTCTCCCAGGGCCACGAGCAGATCTTCATCCAGACGGCCGAGGGGCTCATCATGCACCACGGCGCGGGGGGCCTGGCGTCCGACCGCATAGTCATCGTGACCGACGCCGACGGCACCACCATGCACATCCGCGCGCCTGAGGGCGTACCCCTGGAGACGGTGGAGGCCCTGCTGGGCATCGACACAGAAGGACAGAGCGGGGGCATCCTGGTGTCTGAGACGGGCCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190976 lncRNA downstream 26951 20811540 ~ 20812254 (-) True G151678
TU190684 lncRNA downstream 1215818 19621137 ~ 19623387 (-) True G151447
TU190685 lncRNA downstream 1215818 19621137 ~ 19623387 (-) False G151447
TU190682 lncRNA downstream 1220137 19612250 ~ 19619068 (-) True G151446
TU191027 lncRNA upstream 69875 20914441 ~ 20914680 (-) True G151725
TU191028 lncRNA upstream 70675 20915241 ~ 20916217 (-) True G151726
TU191029 lncRNA upstream 71664 20916230 ~ 20917085 (-) True G151727
TU191045 lncRNA upstream 135507 20980073 ~ 20980345 (-) True G151739
AMCG00000647 mRNA downstream 1699 20836384 ~ 20837506 (-) True AMCG00000647
AMCG00000645 mRNA downstream 3278 20812280 ~ 20835927 (-) True AMCG00000645
AMCG00000644 mRNA downstream 47627 20770081 ~ 20791578 (-) True AMCG00000644
AMCG00000635 mRNA downstream 86548 20744379 ~ 20752657 (-) True AMCG00000635
AMCG00000636 mRNA downstream 98141 20734583 ~ 20741064 (-) True AMCG00000636
AMCG00000652 mRNA upstream 73096 20917662 ~ 20920464 (-) True AMCG00000652
AMCG00000653 mRNA upstream 82125 20926691 ~ 20931514 (-) False AMCG00000653
AMCG00000651 mRNA upstream 90972 20935538 ~ 20938564 (-) True AMCG00000651
AMCG00000638 mRNA upstream 184846 21029412 ~ 21030347 (-) True AMCG00000638
AMCG00000639 mRNA upstream 196643 21041209 ~ 21045473 (-) True AMCG00000639
TU190947 other downstream 91884 20746671 ~ 20747321 (-) False AMCG00000635
TU190879 other downstream 204259 20632089 ~ 20634946 (-) True G151593
TU190711 other downstream 1192730 19643950 ~ 19646475 (-) False AMCG00000618
TU190562 other downstream 1502473 19333977 ~ 19336732 (-) False AMCG00000599
TU190180 other downstream 2423364 18415522 ~ 18415841 (-) True G151090
TU191039 other upstream 82183 20926749 ~ 20935429 (-) True AMCG00000653
TU191083 other upstream 593701 21438267 ~ 21457795 (-) True G151771

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024064 True 4066 mRNA 0.47 7 NC_007128.7 31623356 ~ 31639845 (-)
grasscarp (Ctenopharyngodon idella) CI01000189_03506782_03513494.mRNA True 2814 mRNA 0.50 7 CI01000189 3506782 ~ 3513494 (-)