RNA id: AMCG00000655


Basic Information

Item Value
RNA id AMCG00000655
length 3318
RNA type mRNA
GC content 0.56
exon number 17
gene id AMCG00000655
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21352881 ~ 21374399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCTGTGCACCCAAAACACGGGGCCCCTGTCAGCACAGCACCCTGCAGGGCCCAGTGAACGCCGCCTGGAGCTCTGGTGGGCACCGCTATCACCACGGCGGCGTGTTTACGCTTGCAGAGGGCTGGCAGGCCGAGTCTGCGCCCATCCAGCGCTCGACAGTGCGAAGCAGGCCTTATAAGAGCACAATCCGCAGCGGAGATCAGAGCGGCAGCAGCGCTCACATGACCCGGTGTACCCTGAAGACAGTCATTAATGGGGTGCACCATCTTGGCACAAAGTACCCCGGCGGTGGCAGCTTCAGATTCCAGCAGCATCACATGTCAAGCGGCCACACAGTCTGGCTTCCTCTTCCCCGGGCCCAGAAGGGCTTCACTGTTCGGTCCCTGAGCCGAGCTCTCGCCTGCCGTCAGCTGTTCCCCCACATCCCCAAACAGCCTTTGTTTTCTCGGCCTTCTGCCACGTTTGAGGACTTCCAGATCCGTCCGCACTCGCTGTTCGTCCACTCTTACAGGGCCCCGGCCTTCTGCGACCACTGCGGGGAGATGCTCTGGGGCCTGGTGCGGCAGGGCCTGAAGTGTGAAGGATGTGGTCTGAACTATCACAAGCGCTGTGCGTTTAAGATCCCCAATGACTGCAGCGGGATCCGCAAGAGGCGGCTGTCTAATGTCTCCCTGACCGGCCTGACTTCCTCCAGGTCTGTCTCGGCCGAGCCGTCGCCCAGCACGTCTGACGAAGCCCTGCTGCAGAAAACGCAGTCCGAGTCGTACATCGGCCGGGAGAAGAGATCAAACTCGCAGTCCTACATCGGACGGCCCATCCAGCTGGATAAGATCCTGCTCTCGAAAGTGAAAGTGCCTCACACGTTTGTCATCCACTCCTACACACGTCCCACTGTGTGCCAGTACTGCAAGAAGCTGCTCAAAGGGCTATTTAGGCAGGGACTGCAATGCAAAGATTGCAAGTTCAACTGCCATAAACGCTGTTCTCCCAGAGTGCCAAACAACTGCCTGGGGGAAGTGGCCATAAATGGAGGCAAGTATTCTCATCCTCACCTGCTCAGTCCGGGGACGGAGTCGGACGTGGTGATGGAAGAGGGCAGCGACGACAACGACAGCGAGAGGAACAGCGGCCTCATCGACGACATGGAGGCGTCCCTGAGGCGCGGCCCTTCAACAAGCAACAACATCCCTCTGATGCGAGTGGTGCAGTCGGTCAAGCACACCAAGAGGAAAAGCAGCAACGCCATGAAGGAGGGCTGGCTGGTGCACTTCACCAGCAAAGACACTCTGCGGAAGAGGCACTACTGGAGGCTGGACAGCAAATGCATCACTTTGTTCCAGAATGACACGGGCAGTAAATACTACAAGGAAATCCCACTGTCCGAGGTGCTGTCCCTGGAGCCGGCGAAGAGCTTCGCCTCCCTCCCCACGGGGGCGAACCCGCACTGCTTCGAGATCACCACGGCGAATGTCGTTTATTATGTCGGGGAGAATCTGGTAAACGCCGCCAACATGCCCGCGAACAACAACGTCCTGATCAGTGGCATCGGCCAGGATGTGGCCCGGATGTGGGAGATGGCGATCCAGCACGCGCTGATGCCCGTCATCCCCAAAGGCGGCGCCCACGGCTCCCGGCAGAGCCACCACAAAGACGTTTCGGTGAGCATCTCGGTGTCCAACTGCCAAATTCAAGAAAACGTGGATATTAGTTCTGTGTACCAGATATTTCCTGATGAGGTTCTTGGATCTGGGCAGTTTGGAATCGTCTATGGAGGGAAGCACAGAAAGACAGGACGAGACGTGGCCATTAAAATCATCGACAAGTTGAGGTTCCCCACCAAGCAGGAGAGCCAGCTGCGCAACGAGGTCGCCATCTTACAGAACCTGCACCACCCCGGTGTCGTCAATCTGGAGTGCATGTTTGAGACGCCGGAGCGAGTGTTTGTGGTCATGGAGAAGCTGCACGGGGACATGCTGGAGATGATCCTGTCGAGTGAGAGGGGACGGCTGCCCGAGCGCATCACCAAGTTCCTAATCACACAGGTGAAGCTGTGCGACTTCGGCTTCGCCCGCATCATCGGGGAGAAGTCGTTCCGGCGCTCCGTGGTGGGAACGCCGGCGTACCTGGCCCCCGAGGTGCTGAGGAACAAGGGCTACAACCGCTCTCTGGACATGTGGTCTGTGGGCGTCATCATCTACGTCAGCCTGAGCGGCACCTTCCCCTTCAACGAGGACGAGGACATCCACGATCAGATCCAGAACGCGGCCTTCATGTACCCCCCCAACCCGTGGAAGGAGGTATCCCAGGAAGCAATTGACCTCATTAATAACTTGCTGCAAGTGAAAATGAGGAAGCGCTACAGCGTGGACAAGTCCCTCAGTCACCCCTGGCTACAGGACTATCAGACGTGGCTGGACCTGCGCGGGCTGGAGAGGAAGTTCGGCGAGCGCTACCTCACCCACGAGAGCGACGACTCGCGCTGGGAGCAGTTCGCGGGGCAGCACGGCCTGCAGTACCCGCCGCACCTGCTCCTGTCCCACACGGACTGCAGCGAGGAGGCCGAGCCTGAGGAGACGGAGATGAGGGCGCTGAGCGACAGGGTGAGCGTCCTCTAGCCCTCGGACCACACCTCGGACAGGGCGCCGCCGCTCCCGGCTCGGGcccagacaaaaacaaacctgaTATGTTACCCATACCAAGCTGAGAATGTGCTACTACTACTGTGATCCTCCTCATGCCTGAAGACGACAAGAGAAGGCGACCGGACGTCTCTCCAGAGGACCCACGAACATGCGTGCTTTCCGTGTGCTTGCGTGTGCCGTCGACCACTGTTCCTGTACATGCTGCAGCATCACTGTCTGCTACGgacatctgttttgttttttctctctctcttttataacactgaatttaaaaaggtcttaaatgTGCCtttgctagagctgccctgatGTCATCTTGGACACAAATCTTTGTACGTTTATGTTTCTTATTGTTTAGGAGTCTTGTAAGAGTTCAGAGCGTAGGTTTTGGCTGCTGTTCATGTCTCAGTGCATCTAAGGATTCATAAAGGAAGCTGTGATTTTCTTCGGCAGAAGGATGTCGTAGCGCTTAAACGGGTCAGACCTTACTGTACAATTTTAGCACAAGTGCTTTATGTAAAAAAGGAAGCCTCGATGCCTTAGTCACATTATAAACTGCAgttctgattaaattaaaacacttttcttaTGAAGATGGGTACGAACGCAGTCCAGCAGCTTGATGACATGTTGCCTCTCTGTGTAcgttttcaataaaaatatttaaaaatc

Function

GO:

id name namespace
GO:1901490 regulation of lymphangiogenesis biological_process
GO:0045765 regulation of angiogenesis biological_process

KEGG:

id description
K06070 PKD; protein kinase D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191045 lncRNA downstream 372536 20980073 ~ 20980345 (-) True G151739
TU191029 lncRNA downstream 435796 20916230 ~ 20917085 (-) True G151727
TU191028 lncRNA downstream 436664 20915241 ~ 20916217 (-) True G151726
TU191027 lncRNA downstream 438201 20914441 ~ 20914680 (-) True G151725
TU190976 lncRNA downstream 540627 20811540 ~ 20812254 (-) True G151678
AMCG00000640 mRNA downstream 261394 21089597 ~ 21091487 (-) True AMCG00000640
AMCG00000639 mRNA downstream 307408 21041209 ~ 21045473 (-) True AMCG00000639
AMCG00000638 mRNA downstream 322534 21029412 ~ 21030347 (-) True AMCG00000638
AMCG00000651 mRNA downstream 414317 20935538 ~ 20938564 (-) True AMCG00000651
AMCG00000653 mRNA downstream 421367 20926691 ~ 20931514 (-) False AMCG00000653
AMCG00000656 mRNA upstream 6295 21380694 ~ 21383654 (-) True AMCG00000656
AMCG00000675 mRNA upstream 154769 21529168 ~ 21547638 (-) True AMCG00000675
AMCG00000676 mRNA upstream 173538 21547937 ~ 21559384 (-) True AMCG00000676
AMCG00000673 mRNA upstream 191789 21566188 ~ 21594565 (-) True AMCG00000673
AMCG00000674 mRNA upstream 221439 21595838 ~ 21623627 (-) True AMCG00000674
TU191039 other downstream 417452 20926749 ~ 20935429 (-) True AMCG00000653
TU190947 other downstream 605560 20746671 ~ 20747321 (-) False AMCG00000635
TU190879 other downstream 717935 20632089 ~ 20634946 (-) True G151593
TU190711 other downstream 1706406 19643950 ~ 19646475 (-) False AMCG00000618
TU190562 other downstream 2016149 19333977 ~ 19336732 (-) False AMCG00000599
TU191083 other upstream 63868 21438267 ~ 21457795 (-) True G151771

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022946 True 2637 mRNA 0.52 18 NC_007128.7 28883353 ~ 28968345 (+)
grasscarp (Ctenopharyngodon idella) CI01000189_01884558_01930526.mRNA True 3295 mRNA 0.47 18 CI01000189 1884558 ~ 1931025 (+)