RNA id: AMCG00000668


Basic Information

Item Value
RNA id AMCG00000668
length 3612
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00000668
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21827098 ~ 21846637 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGTCTTTCACCTCGCAGACGCACACATGGGTGCCACTGAACTGAGGGCGCCAGTGGGACTCGATGCGAGGAATATCGTGGCTCTGTGGGGCAACAGTGTGGAGATGGCCATGTGGCTGCCCAGGAAGACGCAGCTGCTGAGCCGGGTCGAGTCTCTGCGCCGGAGCGGGACAGTCCTGCCGGCCGACTTCGAGGACCGAGTCAGCGCCCTGACGGACAAGTGGGACCTGCTTGAGAAAACCCTGGGTGAGCGGACAGAGGGTCCCAGCACCAGCCAACCCAGCCCCAGCCCTCGCGACCTGCTGTCCGCGGACACTGGGCTTCttctgcagcagctggaggGCCGCATCAAAGAGCTGAAGGCCTGGCTGAGGGACACGGAGCTGTTCATCTTCAACTCCTGTCTGAGGCAGGAGAAGGACGAGACACCACACGCCCCAAAGCAGCTGCAGTACTTCAAGTCCCTGTGCAGCGAGGTGCGTCAGCGGCGCAGGGGCGTGTCCTCGGTGCTGCGGCTGTGCCGGCGCCTGCTGGAGGAGCAGGACGGCGCCGCGCCCGATGTCGACAGACAAGCCCTGAAGCTGGTGAGCGTGAACCTGGAGCGCCGCTGGGAGGCCATCGTCATGCAGGCCCTGCAGTGGCAGACACGGCTGCAGAAGAACTTGGGCGCGGAGCAGGACAGCGTTCCTGCCAAACGTGCCACAGCAGCGCAGAGCCTCCCCAGCGCCGCGGTGCCGGTGAACGTCATGGAGCCGGCGTTCATGGATTTACAAGCCCCTGCCGAGGATTCCTGGGAGTGGGACGATACGGACATCAGTAACGACCTGATCGGTGTCAATATGGAGTCAGGTGATCTGGAACCAGCGCAGAGCCATAGATCAAGCCTAACACCGGAGTCCCCTGGGAGCGCAGACCCCCGCCTCAATCAGTTCATCTCCCGCTGTGAGAGCTCCCAGTACAGCTCTGGGTTCGTGCCCCCGGCTTCCCATCCGCACGTATATCAAGTTTACAGTCTGCACAACGTGGAGCTGTATGACAGGCCTCATGTCCCCTGTCTCAGAAAGGCTCCTCCGCACGCAGGCCGAAAACAGCCCAGCGCTCTGATGAAAAGCCTGAGCAAAGACTCGTCTTTCTCTTCCACCGAATCCTTGCCGGATCTGCTCGGAGGCATCATCGCGGTGAAACAGGGCAAGTACGTGTACTGCGGGGACTTGGCCCGGCGTTCGGAGAGCGAGAGCGGGATAGTGAGCGAGGGCGACACGGAAACTACAGCCAACTCCGAGATCTGCCTGCTGAACCCGGCCGACGAGCCCCGGAGTCACCGATCTTCGGAGCTCTCTGTCTGCTCGGACAGGAGGGACGGAAAGGACCCGCTCCACCGCAGCACTTCCCTGGAGAGCTGGCTGGCCCCCTGCAAGAGCACAGAGGAGATCTCAAGTCAGCACAGCTTAGGAGACCTGGCCTTCGGCGGGGACTCCAGTGGGGAGCTCAGCAAGAGGACTCTGGAGCTGCTGAAGCGATTGGAGAACATCCAGAGTCCTCTCAGCCAGAAGATGAAGCGCAGCATCTCAGATATCACTCTCCAGAGCAGCTCCCAGAAGGCGCCCGTGACTGGGCAGCAGTCGCTGGAGGTGGCCTCCTCCGTGAACGAGGACTCGGCCGCCTCCCTGACTGAGCTGAGCAGCAGCGAAGACCTCTCCCTGTGCTCAGAGGACATCGCTGTGCAGAAGAACCGGATCGTGGATTCCAACGCCTCATTCAGGAAGCACGCCAACCACGTGGTCCCCGACGAGGCGGACGTCAGCATCAGCATGATCGTGAACGTGTCCTGCACCTCGGCCTGCACGGACGATGACGAGGATGACAGCGACCTGTTGTCCAGCTCCACGCTCACTCTCACCGAGGAAGAGCTGGGCATCAAGGACGACGACGACTCCAGCATTGCCTCGGACGAGGAGTACATAGAGAGCAGTTTCGTCTTAGGGCTGGACTACATGAAGAACGAACTGCAGAATTGGATCAAGCCCCGGCTGTCTCAGTCCAGGGAGAAGAACGAGCTGGGGGACGAGCTGCAGTGCGGCGCTCTCTCCCGGGAGAACATCGCCCCCACCATCACCGTGAACGAGCGCCGCTTCTTAAGCAAGTCGGCACTGAAGCTGCTGGAGTCCAATGCCAACGGCAAGAGCAATCCCCTCCACAAGAAGGAGTCAGACGTCAACAAGGCCCCCAGACAAGAGACGCGGAGCTACATGAGCCACTTTGTGGATGACATGGAGAATGGGAATGTGGAGAATTCCCAACTCAAGGAgaaagatgaagatgatgagCTTCTGAAGGAAGAAGAGAGTCTTATTACTAAGAGTGGGGAATCATTTAAAGACTGCTATGCATCGGATTCAGGTGCCTCCAATGGAAGGGTCACTGTTGCCAAAGCTGTGCCACGTGACATGCAGTCTTCTCAGCCCAAGGGGGCGTCTCTGGAGTGCCAGCTCAGTGGGGAGATCCCGTGCCACAGCTCCAGCATCAACGCGCCCTCCTTGGTGGCGAGAAATAAGTGTCACGCTACCCATCAGTGTCCGGTGGGGGTGATACGCGGAGACAACAGTCCACACCCCTTCTCTCCCTTCTTGAAGGACACAGGAGAGAGTCACCAGTATGCCACCGATGGCCCGTCATGCTGCAGTCGCTGTCCTCCCACTGGCGAGGAAGAAAAGACCGAAGACGACGGCTCCGTGCACAATTTCGTGATTGAGATCATTGACATGGCATCGGTGGCCTTGAAGAGCAAGGAACAGACGGACCTGGAGGCGCCCAGTCCCACCCCGGTGGCCCAGATCAGGGACAAGGTCCTGGAACACTCGCACCGGCCCATACAGCTGAGGAAAGGTGATTTCTACTCCTATCTCTCCCTGTCCTCCCATGACAGCGACTGCGGGGAGGTCAGCACGTGCGTGGAAGACAAGAGCAGCACGCCCCTGCCCTCCGACCTCAGCGACACCGTGGACATCAGAGACGAGGAGCCTCTCTTTGAGACTTGTACCGAGCAAGTGCACCTCGGCCCCCCACTGCGCTACAGCCCCGCTGTGGCTCGGGGGCCCCGTGCGAGACGAGGCCAGGCACACGCTTGTCTGAGGCAGCCCAGAGGGAGCGACTCCTCCCTGCAGCAGAAAGGCACGGACCCGGCACCCACGACACGCCACGCTGAAAACCAAAAAGCACCTGGTCTTTCTGAAGGAGCTCCAGCGAGGAGCCAGGATGAAAAAGGCGCTGCTTCGCAGAGGATGAAACAGAAGCATGTCAAGAAAGGATGTAGTTCACATCAGGAGACGAGGACAGCTCAGAGACAGttgcCAAGGTCAGACAAAAGCTCAAAAAGTGACGGTAATCAATCCAAAGCCAGAGACGCCCCCGGAGCCCCCGCCCTGCCACCCCGCGACGCCCCCCAGGAGAGAGGGCCCCCGAGGGTGCTGGCCAAGGAGTTTGTCTCCCGTCTCACTGTCTTGGCACATCTGTCTCTGCCCAGTGATCCTAATCCACAGCTGCAGCTCGGCTGCGGAGGCCGGCTCTGCCAGTTTCCACCTGGTCCCAACGGCCACCTGTTCAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191123 lncRNA upstream 228942 21595838 ~ 21598156 (+) True G151804
TU191092 lncRNA upstream 259924 21527590 ~ 21567174 (+) False G151775
AMCG00000663 mRNA upstream 41843 21757699 ~ 21785255 (+) True AMCG00000663
AMCG00000666 mRNA upstream 73410 21747347 ~ 21753688 (+) True AMCG00000666
AMCG00000664 mRNA upstream 110915 21711690 ~ 21716183 (+) True AMCG00000664
AMCG00000665 mRNA upstream 125806 21688115 ~ 21701292 (+) True AMCG00000665
AMCG00000662 mRNA upstream 139713 21683615 ~ 21687385 (+) True AMCG00000662
AMCG00000670 mRNA downstream 108481 21955118 ~ 21956561 (+) True AMCG00000670
AMCG00000669 mRNA downstream 265421 22112058 ~ 22126651 (+) True AMCG00000669
TU190974 other upstream 983635 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1855083 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 3261471 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 3407627 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3667777 18153864 ~ 18159321 (+) True G150976

Expression Profile