RNA id: AMCG00000672


Basic Information

Item Value
RNA id AMCG00000672
length 1230
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00000672
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21631753 ~ 21635860 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGTCCTAAACCCGGACGGTGTCGACCCTGCAACATGGCGGCGGCAGGGGGTCCCGAGCGCGCGCGGGCGGTGCTGCAGCAGTGCCTGCGCGCGAGCCTGCAGGTGAAGCCCCCCGGGCCGGGCGCGCAGGCGGAGTGGGTGCAGATTGAGAGGGGGATGGTGATTTACATCTGCTTTTTCAAAGGGGCCACAGATGAGATAATTCCCAAAATAGTGAACTCTCTCCTGAACCTGAAACTGTGTGAGACGCCGGCCGGGCAGTTCGTGTCCGTGCTGGAGCTCCCAGGGGACGTGCTGGTCGTCCCTCAGGCCACCCTGGGCGGAAAGGCCAAGGGGAAGAGAATGCAGTACCACGCCAACATCGACAAGGAGGACGGGATGAAGCTGTACGGCCAGTTCGTGTCCGAATGCCAGAGGGAGCTGGCCTCGTGCGGCCACTGCGGCGAGGCGGGAGTGGTGCTGCGACACGGGACCTATGGCAATAGACAGGTGCTGAAACTGGACACCAATGGGCCCTATACACACCTCATGGACTTCTGACCAAAGCCACAGTCATTGCTCGTCTACTGCTTACTTCTACTgcgtatatgtatttgtttctatggctgagggagggagggaggagtgTTTCGTCACAGTGTAACAAAGATTCTTTCTGTTAATTCTTCCCATTTTGTTCCTCAATTGCAACAGAAATCATAAAATGGGAAAAGGAGAACTAGTACTGAAGTTCCCTTATTTGCACAAAGCTCACCGTGATATACCTCTGAATTCCCAGCCATAAACGACAAACCATATGAATCTGTTTAATATTCATTGTCGTGTTATAATACATGTCATTCCTGAATGCTTAACAGTTCATAATATATTGAAACTAATTataaaatagattattttggattaaataaaattggGTTCTGCTTACCTAATGCATTTCAGAGTATCGCTCATCCTAGCTGAGAAGTTGTGCGCCGTTATTGATTTAACCTGAAAAGATTTATTGAACCCAACTGTATTTTCATCCAAATTTCAACATAAATCTGTATCTGAATAAAACTCTGATCGATTTTGTGAAAATGCTTTTGCGTTGACTTCGCCGTGATTCTGAAGGGCAGGAAATTGATACGCAATCCATCGTCACCAGAATGCGGGTGCATTTATAATCCAGCCTCTAACCTTCTAGATGACATTGGCGcgctgtatttgtattaaatgcacAATCTCACGA

Function

GO:

id name namespace
GO:0019478 D-amino acid catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K07560 dtd, DTD; D-aminoacyl-tRNA deacylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191045 lncRNA downstream 651408 20980073 ~ 20980345 (-) True G151739
TU191029 lncRNA downstream 714668 20916230 ~ 20917085 (-) True G151727
TU191028 lncRNA downstream 715536 20915241 ~ 20916217 (-) True G151726
TU191027 lncRNA downstream 717073 20914441 ~ 20914680 (-) True G151725
TU190976 lncRNA downstream 819499 20811540 ~ 20812254 (-) True G151678
AMCG00000674 mRNA downstream 8126 21595838 ~ 21623627 (-) True AMCG00000674
AMCG00000673 mRNA downstream 37188 21566188 ~ 21594565 (-) True AMCG00000673
AMCG00000676 mRNA downstream 72369 21547937 ~ 21559384 (-) True AMCG00000676
AMCG00000675 mRNA downstream 84115 21529168 ~ 21547638 (-) True AMCG00000675
AMCG00000656 mRNA downstream 248099 21380694 ~ 21383654 (-) True AMCG00000656
AMCG00000667 mRNA upstream 96063 21731923 ~ 21733685 (-) True AMCG00000667
TU191083 other downstream 173958 21438267 ~ 21457795 (-) True G151771
TU191039 other downstream 696324 20926749 ~ 20935429 (-) True AMCG00000653
TU190947 other downstream 884432 20746671 ~ 20747321 (-) False AMCG00000635
TU190879 other downstream 996807 20632089 ~ 20634946 (-) True G151593
TU190711 other downstream 1985278 19643950 ~ 19646475 (-) False AMCG00000618

Expression Profile