RNA id: TU185290


Basic Information

Item Value
RNA id TU185290
length 214
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G147248
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 195473 ~ 225333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggtcagcagaaggtgaggaagagtggaggaaaaacaggagatccgatttggagaagttgagcttgaggtggtgtgagtgcatccaggcggagatagcagacaaacaggaagagatgcgagaggggatgagagggtcagaagagggaaaagacaggaagatctgggcatcgtcagcatagaagtggtaggagaaaccatgggatgcgatgaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185214 lncRNA downstream 175083 19601 ~ 20390 (-) True G147201
TU185362 lncRNA upstream 203090 428423 ~ 432307 (-) True G147305
TU185423 lncRNA upstream 435025 660358 ~ 680183 (-) True G147358
TU185440 lncRNA upstream 514273 739606 ~ 740609 (-) True G147368
TU185502 lncRNA upstream 577478 802811 ~ 887879 (-) False G147420
TU185503 lncRNA upstream 603122 828455 ~ 887879 (-) True G147420
AMCG00000033 mRNA upstream 29968 255301 ~ 256970 (-) True AMCG00000033
AMCG00000036 mRNA upstream 118078 343411 ~ 364668 (-) True AMCG00000036
AMCG00000037 mRNA upstream 163017 388350 ~ 391817 (-) False AMCG00000037
AMCG00000043 mRNA upstream 348042 573375 ~ 593613 (-) True AMCG00000043
AMCG00000042 mRNA upstream 478324 703657 ~ 709451 (-) True AMCG00000042
TU185350 other upstream 161785 387118 ~ 392135 (-) False AMCG00000037
TU185352 other upstream 161785 387118 ~ 392482 (-) True AMCG00000037
TU185384 other upstream 259387 484720 ~ 485583 (-) True G147324
TU186746 other upstream 5113476 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5835989 6061322 ~ 6067184 (-) False AMCG00000177

Expression Profile