RNA id: TU185362


Basic Information

Item Value
RNA id TU185362
length 3737
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G147305
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 428423 ~ 432307 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATTGttaacagcgtaataaatacacgtttctgttaagagatatcaggaagagctaaacgtgtgacaacattatattcagacaagcatgttcccataagaatacgtttccatgtgcaacaataaaataaatagcaaatatgtattgatttaatcgTCATAATTTGtgctaatatatatgtattttaaacggcaaagcgtgactcccttaacttattaatCTTACTACATATTTGTAAcggcaaacaatactttttgccgaattatttataatttacttagcagacgtccttaaccagggcaagttacacgGCCAGCTGtccataaaatattaataaaatcgtctgctacgatccgattattagtcacggcactgcaccggtcctgtgaaatccaagtttttaatgcactcagatattaactgtaatcAGTTATTAGTCTCTGTCCGTGGATTTCACTGCATGCTGTTAATAAAAGtgcaatttcttcgtgatcgcacacggcacttgagattatatcttccgacacaatgtaagcagatatttaacctccacaaaacacaaaacgctcagccagtggaaacagccgtttaagcgtccggggccgaccacgccagtggaaacggggcttTTTCACGCAGCTCTACTGTGGCCGCTGTGACAACACTGTGCGAGCAGGGATTGAACTCTGGAagtacagaaagaaaatagttcctgtgcatcctagctggcTCTGTGATcttaacaatgaaataataaaataccaaaatagcAAAATACAACGTGTTTATAGCCTAAATCAAAACGAATCGCACAGATGAATAAACTCCTGACCCGTGgcgtgcggtgcggtgcggtgcggtgctcTATACAGTGTGCGTTCAGGATCCTCACATGTGAACCTGTACACGTTTACAATCcgatagatatcacttaaaagaaggtaagacgTCAGTAATGTGTTCATTGCAGAAAAAAGATGCATAATATTCCTCACTTGTTGATACTTAATAATAACGCCCTATTGCATTGAATTCAAACTGTTTTCggtgctggtgaattgaaaccgGTGATAACAGTAACATGAATAACAATACATGGCGTTTAAatccctttattaaaacaagatgcTTGATCTGTGTATCTtcacagacagaacaaaataaactgcagtctttataagcattaaacgtacttacaatttacagacaaggtacctgttttcaagaaaatgtgtttcacgatatcagtgattagcagaaaactgaaaccaattcctgcattaaaatgactgaacaTGACACACCTTCTTTGACATTACTGATATGTCCGATTTATGtcggtttgtaaaaaatataaggGTATCAAGATCAGGCCCGGCGCCGGGGGGCAAAAGCGGGTAATGCCCCCTCAGTTGGATTATAGTGCCCCCtcacatttaattttatcaGGTTATTGACtgtccatgtagaaatgtcttacggtaatgtgcattcttgttacaaaactgaTGTGCATTGCCGCACATTCTGGAATTTTACTTCCCCCTCTTCCCCTTTACTTCGCCGCCACCATCAGATCCCTCCGGCGGAGCAGATGTAATAGATGTTGTTTCACTTCTCAGCTCAGCTGCTTTTGttctttaataaagaaaaaaacagtattcgaaaagtaatctaaaagtattctgattacgttactTATTttgagtaatgtattggattaggttacagattattttcaaaacaagataatcagtattctgtaacggaatactttttaaaagtaaccttCCCAAACCTGTCTACATTCATAGGTGAGCAGAAATCTCTTTATttcaatacaacaaaacaagtgGTACCTGCTTCAGGTATTTTGTTGGCTGTTGGAATAGACAGAAGAAAAGTTTGGAGTGTAACTgttcaataatattattttatagtgaCTTTCCCTTAAATTATAGCAATCTCGtctaaacattttacagttagTTTTGAAAAACCAACAGATATGTATAGAATTAGGGTGAAATAGTGCAGATTTTAactttaatcaaaatattttaaattactataGCTAAGAAGTGTTAATACCCAGGGCTTCAGTAATCAGattaaccaaaaataaaataaaataaaataaaatgcaccaaAGATGAGCTGAGAAACCAACATTTTCAAGCTCATAAGAACTTAAGCAGGACCCaacttgatttgtattttcaatgcCTTTAACCTTTAACCAAAATGACTCATGTTAAAATATCTACATGCCTTCAACTTTTAATTCAAGATAACAGATTCATCAGAGGTGTCTGGCTTTCGTGTAGAATACAGAGAAGAGTATCGAAGAatgaatccagtttgaatcttAAGCCGCAGTCCCGCAGTGGCAGtctcattgttttgattttttttatcctgAAAGATGACTTGTTCAGGGCATTGGTGCTTGTGCCTGTCAATCAAGACAAGTTGCCAAATGATGGTAGAGGGTGAACCAAAAACCCCTCCGAGTCAATAATTCCCATTGACAGACCCACACTGAGCCTGGCAGATTATCCCGGTTGTGTAATGAGATAATCATCACAGGATGTTATTGCCTCCTGGGTGTAATTTTGTGCACTGCAAGACGGCCtctctgtattctgtattactGTGTCCTTTGACAATGCAGTCCAAAAGCAGGGATCTTCATTGGCAGAGATCTACAGCTGTTCCCTGGGGACAAGTTATCTTGGGAAATCCTTCCTCCTTTTCAGGATGCTTGGGGATCTGACatctgacaaataaattaatgtctaATAGGTTCCCTTACGATTTTATATCTGATCTGTCAGGACTGTGCTCAATGTAGCCTTATTTCCTTACTATGTTAATTCATCTGGTTACAgattctgtgctgtgctggcaTCAGTGTGTCTGCAGCTCAGTGAGTGTGTCAAGCCACACCAGATGCCTAACAAAACCTGCTGAAATGGTTCCAAGTTATTGAACCTCATTGGTTCAGTGTCTATTTCTTTCCATAGTTAGATTTATCCAGTTGTTGCAAGACAATCTCTTTCATTTGATGGCTTCTGCaccaaataatgttttttattacaatttctctcccctctctgccCTTCCCTTCTACCTCTAACACTCAATCTCTCTTTCTTCAGCACGCCAAACTCACATACCTTTTTTCTAGATAACCAATGTCCAGATTCTTCACCACAATCCATCTCTCTtccctatttatatatatatatatatgtcatgcCATGTCCCTCCCAAACCCTTTACCCATTTGTGCTGTCCACTCTCCCCGAGTCTCTCAGCCTCCTTTTATTCTCAGAGCTGCCGATTGAGTTTCTGGGCTTGCCGCTCCTTGGATTCAAAAGCAAACTTGGTGTCCTGGAGTTGGACAATGGTTTCCTTGGCCTCCTTCATATCCTGGGTCAGCTGACTGTACTTCTGGGCCAGCTCCTTGTTCTCTCGTCGCAACTCCAACACCACCTGGTTGAGCTCCTCACTCTGCTTTGTGCAGTACATCTTCAGCTGCTCTACTTCAGAGAGCATGATTTCCATGTTCTTCACCAGTGACTCCAGCTTCTCTTTCGAcatcttttctttctcctaATGGTTCTGCAAGCCGCTCAGCTCCTCTGTACTGCTGCTCCTGTGTGATCTGGACTCTGGCAAGCCATAGCACAGACTGCCTTCCTATTTAACACCTAATCCCTCCACCCCACCAG

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185290 lncRNA downstream 203090 195473 ~ 225333 (-) True G147248
TU185214 lncRNA downstream 408033 19601 ~ 20390 (-) True G147201
TU185423 lncRNA upstream 228051 660358 ~ 680183 (-) True G147358
TU185440 lncRNA upstream 307299 739606 ~ 740609 (-) True G147368
TU185502 lncRNA upstream 370504 802811 ~ 887879 (-) False G147420
TU185503 lncRNA upstream 396148 828455 ~ 887879 (-) True G147420
TU185516 lncRNA upstream 500416 932723 ~ 940835 (-) True AMCG00000050
AMCG00000037 mRNA downstream 36606 388350 ~ 391817 (-) False AMCG00000037
AMCG00000036 mRNA downstream 63755 343411 ~ 364668 (-) True AMCG00000036
AMCG00000033 mRNA downstream 171453 255301 ~ 256970 (-) True AMCG00000033
AMCG00000043 mRNA upstream 141068 573375 ~ 593613 (-) True AMCG00000043
AMCG00000042 mRNA upstream 271350 703657 ~ 709451 (-) True AMCG00000042
AMCG00000045 mRNA upstream 407470 839777 ~ 840646 (-) True AMCG00000045
AMCG00000046 mRNA upstream 408399 840706 ~ 859715 (-) True AMCG00000046
AMCG00000050 mRNA upstream 457805 890112 ~ 940816 (-) False AMCG00000050
TU185352 other downstream 35941 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 36288 387118 ~ 392135 (-) False AMCG00000037
TU185384 other upstream 52413 484720 ~ 485583 (-) True G147324
TU186746 other upstream 4906502 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5629015 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 5718413 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 5776967 6209274 ~ 6209957 (-) False AMCG00000189

Expression Profile