RNA id: TU185423


Basic Information

Item Value
RNA id TU185423
length 1184
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G147358
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 660358 ~ 680183 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGGTTGAGCCGGCGGGGCAGGCGGGCAGGTGAGGAGGCTGTCGGCGGTGCGAGGGCTGCCGCATTTCCTCCTTACTTCTGCTGGATTTGGTGTTATTTCGATCTCTTTTTGAGTAGTACAGATACGAAGCCAGTGTTAATAGGCACTAGGAAACCACAGGACGGAGCTGCTGTTAAGcaatggaaaacCGAACCTGATTCAGTTTGGGCATCCACTCTGCCCAGATCTACCCCTACCACCCCCCTGGGGtgcaactgaacaaaacaaagactcacaGTGCACTGGATCACAAGCAGAACAATCACACACCTTTGCCCTTGCCTTGCCGCTCTGGACACAGCAAACCCTCAATATAGCCCTGCTGCTTTGAGCAGGAACTGTGAGCACTGTAaggtcagcagaatatataacaaaacaccCTGGCATGCTAGGTGCCCCTCTGCCACTTCCTGGAGAGgcccagctttgctcagtggcttgtctgagggacctgaataacTCGCAAAGATGCTGACAATCATGTACTTCAATGGAGATGTGATAGATGGAAAACTTACAATGGACAGACATAGGAGCTCATAAGGTAGTTCCATAGGTTTTGCCTATTGATGCATTATTGCCTGGATTCTTGCaagaatcttttttttcctttccagtgAAACTTAGTAGAAGTCTGTATTGATGCACTTGCcttgataaaaatataaaaacagtgcaATGTTGTGTTGCATCATTACAAATGTACTGTTACCTTATTAAATTGTTGACATTTTATTCATTCACATTACTAGACACTTTCTGATTATAAAATTAGCATACACCGTAAAACACAGaattcagaaaaatgtaaacgGAATTTGGGAAAAAAGTTTATGGATTTCATAGGGCCCTAGTTTACTGATCTTACCCGAGTGATTTTTCACATCACCGATGGAGCTAGCAAGCCGTGAATATTAGTGTTTAATAAGGTTTGGATTTCAACACAATGTACATTACTGAGCAGtgcacaacagacacacaaaaatatagaGAGCACAATGATGATAGAAAAATGGCTTTCTGAATTACCATTAACACAAAGTACACCATTGCTAAGCATGAAACATCCATCAGTAAACATACTTTACcatgaaacccacaataaactgaccagttatcttgcacttttataattCACTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185362 lncRNA downstream 228051 428423 ~ 432307 (-) True G147305
TU185290 lncRNA downstream 435025 195473 ~ 225333 (-) True G147248
TU185214 lncRNA downstream 639968 19601 ~ 20390 (-) True G147201
TU185440 lncRNA upstream 59423 739606 ~ 740609 (-) True G147368
TU185502 lncRNA upstream 122628 802811 ~ 887879 (-) False G147420
TU185503 lncRNA upstream 148272 828455 ~ 887879 (-) True G147420
TU185516 lncRNA upstream 252540 932723 ~ 940835 (-) True AMCG00000050
TU185499 lncRNA upstream 492133 1172316 ~ 1174302 (-) True G147419
AMCG00000043 mRNA downstream 66745 573375 ~ 593613 (-) True AMCG00000043
AMCG00000037 mRNA downstream 268541 388350 ~ 391817 (-) False AMCG00000037
AMCG00000036 mRNA downstream 295690 343411 ~ 364668 (-) True AMCG00000036
AMCG00000033 mRNA downstream 403388 255301 ~ 256970 (-) True AMCG00000033
AMCG00000042 mRNA upstream 23474 703657 ~ 709451 (-) True AMCG00000042
AMCG00000045 mRNA upstream 159594 839777 ~ 840646 (-) True AMCG00000045
AMCG00000046 mRNA upstream 160523 840706 ~ 859715 (-) True AMCG00000046
AMCG00000050 mRNA upstream 209929 890112 ~ 940816 (-) False AMCG00000050
AMCG00000065 mRNA upstream 623756 1303939 ~ 1342353 (-) True AMCG00000065
TU185384 other downstream 174775 484720 ~ 485583 (-) True G147324
TU185352 other downstream 267876 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 268223 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 4658626 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5381139 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 5470537 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 5529091 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 5535573 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile