RNA id: TU185503


Basic Information

Item Value
RNA id TU185503
length 231
lncRNA type read_through
GC content 0.54
exon number 2
gene id G147420
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 802811 ~ 887879 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAATCAGTTATGGTTCCTTTGATCGCTCCAAGTCTACTTGGATAACTGTGGCAATTCTAGAGCTAATACATGCAAACGAGCGCTGACCTTCGGGGATGCGTGCATTTATCAGACCAAAAACCCATCCGGGGTCCAGCCCCCGGCCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACTCATTCGAATGTCTGCCTTAACAACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185440 lncRNA downstream 87846 739606 ~ 740609 (-) True G147368
TU185423 lncRNA downstream 148272 660358 ~ 680183 (-) True G147358
TU185362 lncRNA downstream 396148 428423 ~ 432307 (-) True G147305
TU185290 lncRNA downstream 603122 195473 ~ 225333 (-) True G147248
TU185214 lncRNA downstream 808065 19601 ~ 20390 (-) True G147201
TU185516 lncRNA upstream 44844 932723 ~ 940835 (-) True AMCG00000050
TU185499 lncRNA upstream 284437 1172316 ~ 1174302 (-) True G147419
TU185500 lncRNA upstream 284437 1172316 ~ 1174302 (-) False G147419
TU185558 lncRNA upstream 300920 1188799 ~ 1189043 (-) True G147467
TU185695 lncRNA upstream 725454 1613333 ~ 1619067 (-) True G147588
AMCG00000042 mRNA downstream 119004 703657 ~ 709451 (-) True AMCG00000042
AMCG00000043 mRNA downstream 234842 573375 ~ 593613 (-) True AMCG00000043
AMCG00000037 mRNA downstream 436638 388350 ~ 391817 (-) False AMCG00000037
AMCG00000036 mRNA downstream 463787 343411 ~ 364668 (-) True AMCG00000036
AMCG00000033 mRNA downstream 571485 255301 ~ 256970 (-) True AMCG00000033
AMCG00000050 mRNA upstream 2233 890112 ~ 940816 (-) False AMCG00000050
AMCG00000065 mRNA upstream 416060 1303939 ~ 1342353 (-) True AMCG00000065
AMCG00000062 mRNA upstream 504930 1392809 ~ 1441915 (-) True AMCG00000062
AMCG00000058 mRNA upstream 596641 1484520 ~ 1488089 (-) True AMCG00000058
AMCG00000059 mRNA upstream 601592 1489471 ~ 1544026 (-) True AMCG00000059
TU185384 other downstream 342872 484720 ~ 485583 (-) True G147324
TU185352 other downstream 435973 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 436320 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 4450930 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 5173443 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 5262841 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 5321395 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 5327877 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile