RNA id: TU185670


Basic Information

Item Value
RNA id TU185670
length 268
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G147564
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1586057 ~ 1586324 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaaaatgtagatttgagaacaagggcagtaatgttcagactgtacaatgcactagttagacctcatctggaatactgtgtacagttctgggctccacacttcaagaaggatatcgctgctttagaggcagttcagaggagataaaccagacttattccaggtctgaagggaatgtcttactgagagactgagggaactgaaagttttcaccctggaacacagGAGACTACGtagggacttgattcaagtcttcaaaatcatgaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185655 lncRNA upstream 93744 1489580 ~ 1492313 (+) True G147551
TU185557 lncRNA upstream 397015 1188808 ~ 1189042 (+) True G147466
TU185454 lncRNA upstream 411755 1172759 ~ 1174302 (+) True G147380
TU185471 lncRNA upstream 516287 904970 ~ 1069770 (+) True G147393
TU185484 lncRNA upstream 644146 940858 ~ 941911 (+) True G147405
TU185671 lncRNA downstream 1753 1588077 ~ 1588295 (+) True G147565
TU185686 lncRNA downstream 26986 1613310 ~ 1615951 (+) True G147579
TU185687 lncRNA downstream 32848 1619172 ~ 1620075 (+) True G147580
TU185772 lncRNA downstream 234033 1820357 ~ 1829543 (+) True G147635
TU185815 lncRNA downstream 472209 2058533 ~ 2058770 (+) False AMCG00000073
AMCG00000056 mRNA upstream 203003 1361377 ~ 1383054 (+) True AMCG00000056
AMCG00000055 mRNA upstream 291292 1243198 ~ 1294765 (+) True AMCG00000055
AMCG00000054 mRNA upstream 421653 1139043 ~ 1164404 (+) True AMCG00000054
AMCG00000053 mRNA upstream 543454 991040 ~ 1042603 (+) True AMCG00000053
AMCG00000052 mRNA upstream 607513 957706 ~ 978544 (+) True AMCG00000052
AMCG00000057 mRNA downstream 106828 1693152 ~ 1719606 (+) True AMCG00000057
AMCG00000066 mRNA downstream 154485 1740809 ~ 1781771 (+) True AMCG00000066
AMCG00000067 mRNA downstream 274184 1860508 ~ 1860744 (+) True AMCG00000067
AMCG00000072 mRNA downstream 427223 2013547 ~ 2034642 (+) True AMCG00000072
AMCG00000073 mRNA downstream 449699 2036023 ~ 2058765 (+) True AMCG00000073
TU185496 other upstream 469107 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 1087546 449652 ~ 498511 (+) True G147311
TU185240 other upstream 1339052 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 1520768 64746 ~ 65289 (+) False AMCG00000025
TU185221 other upstream 1549483 35282 ~ 36574 (+) False AMCG00000026
TU185878 other downstream 817406 2403730 ~ 2403972 (+) True G147726
TU186234 other downstream 2106785 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 2134661 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 2173855 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 3848834 5435158 ~ 5435762 (+) False AMCG00000142

Expression Profile